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Protein
Submitted name:

DEgenerin Like

Gene

del-9

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Ion channel, Sodium channelUniRule annotationSAAS annotation

Keywords - Biological processi

Ion transport, Sodium transport, Transport

Keywords - Ligandi

Sodium

Names & Taxonomyi

Protein namesi
Submitted name:
DEgenerin LikeImported
Gene namesi
Name:del-9Imported
ORF Names:C18B2.6Imported, CELE_C18B2.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiC18B2.6; CE04045; WBGene00015957; del-9.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei126 – 14621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ18077.

Interactioni

Protein-protein interaction databases

STRINGi6239.C18B2.6.

Structurei

3D structure databases

ProteinModelPortaliQ18077.
SMRiQ18077. Positions 125-516.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili38 – 6528Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family. [View classification]UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG4294. Eukaryota.
ENOG410ZNFK. LUCA.
HOGENOMiHOG000020223.
InParanoidiQ18077.
OMAiNPGINQM.
OrthoDBiEOG7K9K2T.
PhylomeDBiQ18077.

Family and domain databases

InterProiIPR001873. Na+channel_ASC.
[Graphical view]
PANTHERiPTHR11690. PTHR11690. 1 hit.
PfamiPF00858. ASC. 1 hit.
[Graphical view]
PRINTSiPR01078. AMINACHANNEL.

Sequencei

Sequence statusi: Complete.

Q18077-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDHQRRSTIR RTRFDEASCV MYMNGNFPET TVVRSHSLTQ SQSLSDSAES
60 70 80 90 100
AIRRLKKENH CLKKTLSRRW SGRSRASTRS HDPTDASSLS DSSDDNDDSL
110 120 130 140 150
YLLRETSTLH GLRDVMLSSS GRLRMVWVLI VILALFMTFQ GCYQIMDEYS
160 170 180 190 200
MRRIVVSYFI QEAQSIWVPD VVVCPYNRLN RSFIEANNVS FELAQFLELS
210 220 230 240 250
FPSMDLPFEN IQQQQEEIIS KIDTLDFQIE ILLEQNNMTY AQFLRKASLN
260 270 280 290 300
CEAFFEDSRR CANTTEIMTS AGKCFRMAGI KQEIAGFGNG DRYVIDLPEE
310 320 330 340 350
YYNPGINQMI NSGVIIKLAE RGQGIDNDLT FLPAGVHAIM PLLGTQFEFM
360 370 380 390 400
NDPPRYECEE DPHGNYSRVH CFEDCLTLDA QQTCQCSPAA AQNPAYPDKL
410 420 430 440 450
CTATQLYHCF FTKLFPEDSN LSKAIVDACK KECKAPCHAW NYNKQVSYSS
460 470 480 490 500
IPSEASKKLL PREEWEKMKR KIILDIYYSE LDYTIIKHVI AMPLSSLIAQ
510 520 530 540 550
IGGQFSLFAG GSLISLCQIV IYSVRYVMHK FCGLKSQRRR CRETREAHEA
560 570 580 590
RQRRDMRRRR RNSTSHSRST PKPHNGNGNG KVVNVEMVTT HTSETTPPI
Length:599
Mass (Da):68,605
Last modified:November 1, 1996 - v1
Checksum:i42F3C5BF6E5FB734
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CCD65078.1.
PIRiT15552.
RefSeqiNP_508622.1. NM_076221.1.
UniGeneiCel.11329.

Genome annotation databases

EnsemblMetazoaiC18B2.6; C18B2.6; WBGene00015957.
GeneIDi182767.
KEGGicel:CELE_C18B2.6.
UCSCiC18B2.6. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CCD65078.1.
PIRiT15552.
RefSeqiNP_508622.1. NM_076221.1.
UniGeneiCel.11329.

3D structure databases

ProteinModelPortaliQ18077.
SMRiQ18077. Positions 125-516.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C18B2.6.

Proteomic databases

PaxDbiQ18077.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC18B2.6; C18B2.6; WBGene00015957.
GeneIDi182767.
KEGGicel:CELE_C18B2.6.
UCSCiC18B2.6. c. elegans.

Organism-specific databases

CTDi182767.
WormBaseiC18B2.6; CE04045; WBGene00015957; del-9.

Phylogenomic databases

eggNOGiKOG4294. Eukaryota.
ENOG410ZNFK. LUCA.
HOGENOMiHOG000020223.
InParanoidiQ18077.
OMAiNPGINQM.
OrthoDBiEOG7K9K2T.
PhylomeDBiQ18077.

Miscellaneous databases

NextBioi918758.

Family and domain databases

InterProiIPR001873. Na+channel_ASC.
[Graphical view]
PANTHERiPTHR11690. PTHR11690. 1 hit.
PfamiPF00858. ASC. 1 hit.
[Graphical view]
PRINTSiPR01078. AMINACHANNEL.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ18077_CAEEL
AccessioniPrimary (citable) accession number: Q18077
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.