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Q17QN3

- RSMN_BOVIN

UniProt

Q17QN3 - RSMN_BOVIN

Protein

Small nuclear ribonucleoprotein-associated protein N

Gene

SNRPN

Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (25 Jul 2006)
      Previous versions | rss
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    Functioni

    May be involved in tissue-specific alternative RNA processing events.By similarity

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW

    Keywords - Molecular functioni

    Ribonucleoprotein

    Keywords - Ligandi

    RNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Small nuclear ribonucleoprotein-associated protein N
    Short name:
    snRNP-N
    Alternative name(s):
    Sm protein N
    Short name:
    Sm-N
    Short name:
    SmN
    Gene namesi
    Name:SNRPN
    OrganismiBos taurus (Bovine)
    Taxonomic identifieri9913 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
    ProteomesiUP000009136: Chromosome 21

    Subcellular locationi

    Nucleus By similarity

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell
    2. ribonucleoprotein complex Source: UniProtKB-KW

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 240240Small nuclear ribonucleoprotein-associated protein NPRO_0000249873Add
    BLAST

    Proteomic databases

    PRIDEiQ17QN3.

    Interactioni

    Subunit structurei

    Interacts with TDRD3.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ17QN3.
    SMRiQ17QN3. Positions 2-91.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati175 – 1817
    Repeati191 – 1966
    Repeati216 – 2216
    Repeati222 – 2287
    Repeati230 – 2367

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni175 – 23662Repeat-rich regionAdd
    BLAST

    Sequence similaritiesi

    Belongs to the snRNP SmB/SmN family.Curated

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG1958.
    GeneTreeiENSGT00670000098029.
    HOVERGENiHBG001019.
    InParanoidiQ17QN3.
    KOiK11100.
    OMAiHHTFICS.
    OrthoDBiEOG7J70HT.
    TreeFamiTF314232.

    Family and domain databases

    InterProiIPR010920. LSM_dom.
    IPR001163. Ribonucl_LSM.
    IPR006649. Ribonucl_LSM_euk/arc.
    IPR017131. snRNP-assoc_SmB/SmN.
    [Graphical view]
    PfamiPF01423. LSM. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037187. snRNP_SmB/SmN. 1 hit.
    SMARTiSM00651. Sm. 1 hit.
    [Graphical view]
    SUPFAMiSSF50182. SSF50182. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q17QN3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK    50
    IKPKNAKQPE REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA 100
    AGGPGVGRAA GRGVPAGVPI PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV 150
    AAAAVAATAS IAGAPTQYPP GRGTAPTPVG RATPPPGIMA PPPGMRPPMG 200
    PPIGLPPTRG TPIGMPPPGM RPPPPGIRGP PPPGMRPPRP 240
    Length:240
    Mass (Da):24,622
    Last modified:July 25, 2006 - v1
    Checksum:i817B1A02EFCBF748
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC118260 mRNA. Translation: AAI18261.1.
    BC147854 mRNA. Translation: AAI47855.1.
    RefSeqiNP_001073265.1. NM_001079797.1.
    UniGeneiBt.4887.

    Genome annotation databases

    EnsembliENSBTAT00000010856; ENSBTAP00000010856; ENSBTAG00000008251.
    GeneIDi780877.
    KEGGibta:780877.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC118260 mRNA. Translation: AAI18261.1 .
    BC147854 mRNA. Translation: AAI47855.1 .
    RefSeqi NP_001073265.1. NM_001079797.1.
    UniGenei Bt.4887.

    3D structure databases

    ProteinModelPortali Q17QN3.
    SMRi Q17QN3. Positions 2-91.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q17QN3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSBTAT00000010856 ; ENSBTAP00000010856 ; ENSBTAG00000008251 .
    GeneIDi 780877.
    KEGGi bta:780877.

    Organism-specific databases

    CTDi 6638.

    Phylogenomic databases

    eggNOGi COG1958.
    GeneTreei ENSGT00670000098029.
    HOVERGENi HBG001019.
    InParanoidi Q17QN3.
    KOi K11100.
    OMAi HHTFICS.
    OrthoDBi EOG7J70HT.
    TreeFami TF314232.

    Miscellaneous databases

    NextBioi 20924520.

    Family and domain databases

    InterProi IPR010920. LSM_dom.
    IPR001163. Ribonucl_LSM.
    IPR006649. Ribonucl_LSM_euk/arc.
    IPR017131. snRNP-assoc_SmB/SmN.
    [Graphical view ]
    Pfami PF01423. LSM. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037187. snRNP_SmB/SmN. 1 hit.
    SMARTi SM00651. Sm. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50182. SSF50182. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. NIH - Mammalian Gene Collection (MGC) project
      Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: Hereford.
      Tissue: Basal ganglia and Fetal pons.

    Entry informationi

    Entry nameiRSMN_BOVIN
    AccessioniPrimary (citable) accession number: Q17QN3
    Secondary accession number(s): A6QL65
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 19, 2006
    Last sequence update: July 25, 2006
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Miscellaneous

    Encoded on a bicistronic transcript that code for two proteins, SNRPN and SNURF.

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3