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Q17QN3 (RSMN_BOVIN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Small nuclear ribonucleoprotein-associated protein N

Short name=snRNP-N
Alternative name(s):
Sm protein N
Short name=Sm-N
Short name=SmN
Gene names
Name:SNRPN
OrganismBos taurus (Bovine) [Reference proteome]
Taxonomic identifier9913 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos

Protein attributes

Sequence length240 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May be involved in tissue-specific alternative RNA processing events By similarity.

Subunit structure

Interacts with TDRD3 By similarity.

Subcellular location

Nucleus By similarity.

Miscellaneous

Encoded on a bicistronic transcript that code for two proteins, SNRPN and SNURF.

Sequence similarities

Belongs to the snRNP SmB/SmN family.

Ontologies

Keywords
   Cellular componentNucleus
   DomainRepeat
   LigandRNA-binding
   Molecular functionRibonucleoprotein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentnucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

ribonucleoprotein complex

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 240240Small nuclear ribonucleoprotein-associated protein N
PRO_0000249873

Regions

Repeat175 – 1817
Repeat191 – 1966
Repeat216 – 2216
Repeat222 – 2287
Repeat230 – 2367
Region175 – 23662Repeat-rich region

Sequences

Sequence LengthMass (Da)Tools
Q17QN3 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 817B1A02EFCBF748

FASTA24024,622
        10         20         30         40         50         60 
MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNAKQPE 

        70         80         90        100        110        120 
REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA AGGPGVGRAA GRGVPAGVPI 

       130        140        150        160        170        180 
PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV AAAAVAATAS IAGAPTQYPP GRGTAPTPVG 

       190        200        210        220        230        240 
RATPPPGIMA PPPGMRPPMG PPIGLPPTRG TPIGMPPPGM RPPPPGIRGP PPPGMRPPRP 

« Hide

References

[1]NIH - Mammalian Gene Collection (MGC) project
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: Hereford.
Tissue: Basal ganglia and Fetal pons.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC118260 mRNA. Translation: AAI18261.1.
BC147854 mRNA. Translation: AAI47855.1.
RefSeqNP_001073265.1. NM_001079797.1.
UniGeneBt.4887.

3D structure databases

ProteinModelPortalQ17QN3.
SMRQ17QN3. Positions 2-91.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEQ17QN3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSBTAT00000010856; ENSBTAP00000010856; ENSBTAG00000008251.
GeneID780877.
KEGGbta:780877.

Organism-specific databases

CTD6638.

Phylogenomic databases

eggNOGCOG1958.
GeneTreeENSGT00670000098029.
HOVERGENHBG001019.
InParanoidQ17QN3.
KOK11100.
OMAHHTFICS.
OrthoDBEOG7J70HT.
TreeFamTF314232.

Family and domain databases

InterProIPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
IPR006649. Ribonucl_LSM_euk/arc.
IPR017131. snRNP-assoc_SmB/SmN.
[Graphical view]
PfamPF01423. LSM. 1 hit.
[Graphical view]
PIRSFPIRSF037187. snRNP_SmB/SmN. 1 hit.
SMARTSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMSSF50182. SSF50182. 1 hit.
ProtoNetSearch...

Other

NextBio20924520.

Entry information

Entry nameRSMN_BOVIN
AccessionPrimary (citable) accession number: Q17QN3
Secondary accession number(s): A6QL65
Entry history
Integrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: July 25, 2006
Last modified: May 14, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families