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Q17QN3

- RSMN_BOVIN

UniProt

Q17QN3 - RSMN_BOVIN

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Protein
Small nuclear ribonucleoprotein-associated protein N
Gene
SNRPN
Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in tissue-specific alternative RNA processing events By similarity.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Small nuclear ribonucleoprotein-associated protein N
Short name:
snRNP-N
Alternative name(s):
Sm protein N
Short name:
Sm-N
Short name:
SmN
Gene namesi
Name:SNRPN
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Chromosome 21

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
  2. ribonucleoprotein complex Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 240240Small nuclear ribonucleoprotein-associated protein N
PRO_0000249873Add
BLAST

Proteomic databases

PRIDEiQ17QN3.

Interactioni

Subunit structurei

Interacts with TDRD3 By similarity.

Structurei

3D structure databases

ProteinModelPortaliQ17QN3.
SMRiQ17QN3. Positions 2-91.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati175 – 1817
Repeati191 – 1966
Repeati216 – 2216
Repeati222 – 2287
Repeati230 – 2367

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni175 – 23662Repeat-rich region
Add
BLAST

Sequence similaritiesi

Belongs to the snRNP SmB/SmN family.

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG1958.
GeneTreeiENSGT00670000098029.
HOVERGENiHBG001019.
InParanoidiQ17QN3.
KOiK11100.
OMAiHHTFICS.
OrthoDBiEOG7J70HT.
TreeFamiTF314232.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
IPR006649. Ribonucl_LSM_euk/arc.
IPR017131. snRNP-assoc_SmB/SmN.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
PIRSFiPIRSF037187. snRNP_SmB/SmN. 1 hit.
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

Q17QN3-1 [UniParc]FASTAAdd to Basket

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MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK    50
IKPKNAKQPE REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA 100
AGGPGVGRAA GRGVPAGVPI PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV 150
AAAAVAATAS IAGAPTQYPP GRGTAPTPVG RATPPPGIMA PPPGMRPPMG 200
PPIGLPPTRG TPIGMPPPGM RPPPPGIRGP PPPGMRPPRP 240
Length:240
Mass (Da):24,622
Last modified:July 25, 2006 - v1
Checksum:i817B1A02EFCBF748
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC118260 mRNA. Translation: AAI18261.1.
BC147854 mRNA. Translation: AAI47855.1.
RefSeqiNP_001073265.1. NM_001079797.1.
UniGeneiBt.4887.

Genome annotation databases

EnsembliENSBTAT00000010856; ENSBTAP00000010856; ENSBTAG00000008251.
GeneIDi780877.
KEGGibta:780877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC118260 mRNA. Translation: AAI18261.1 .
BC147854 mRNA. Translation: AAI47855.1 .
RefSeqi NP_001073265.1. NM_001079797.1.
UniGenei Bt.4887.

3D structure databases

ProteinModelPortali Q17QN3.
SMRi Q17QN3. Positions 2-91.
ModBasei Search...

Proteomic databases

PRIDEi Q17QN3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSBTAT00000010856 ; ENSBTAP00000010856 ; ENSBTAG00000008251 .
GeneIDi 780877.
KEGGi bta:780877.

Organism-specific databases

CTDi 6638.

Phylogenomic databases

eggNOGi COG1958.
GeneTreei ENSGT00670000098029.
HOVERGENi HBG001019.
InParanoidi Q17QN3.
KOi K11100.
OMAi HHTFICS.
OrthoDBi EOG7J70HT.
TreeFami TF314232.

Miscellaneous databases

NextBioi 20924520.

Family and domain databases

InterProi IPR010920. LSM_dom.
IPR001163. Ribonucl_LSM.
IPR006649. Ribonucl_LSM_euk/arc.
IPR017131. snRNP-assoc_SmB/SmN.
[Graphical view ]
Pfami PF01423. LSM. 1 hit.
[Graphical view ]
PIRSFi PIRSF037187. snRNP_SmB/SmN. 1 hit.
SMARTi SM00651. Sm. 1 hit.
[Graphical view ]
SUPFAMi SSF50182. SSF50182. 1 hit.
ProtoNeti Search...

Publicationsi

  1. NIH - Mammalian Gene Collection (MGC) project
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Hereford.
    Tissue: Basal ganglia and Fetal pons.

Entry informationi

Entry nameiRSMN_BOVIN
AccessioniPrimary (citable) accession number: Q17QN3
Secondary accession number(s): A6QL65
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: July 25, 2006
Last modified: May 14, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded on a bicistronic transcript that code for two proteins, SNRPN and SNURF.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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