Unreviewed, UniProtKB/TrEMBL Q17878 (Q17878_CAEEL)

Names and origin

Protein names

Submitted name:
    Protein T11B7.4d, partially confirmed by transcript evidence EMBL CAA90978.1

Gene names

Name:	alp-1 WormBase WBGene00001132
ORF Names:	T11B7.4 WormPep T11B7.4d, T11B7.4d EMBL CAA90978.1

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	1424 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 4 LIM zinc-binding domains. RuleBase RU000350V1

Ontologies

Keywords
Domain	LIM domain RuleBase RU000350V1
Ligand	Metal-binding Zinc
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	locomotion Inferred from mutant phenotype. Source: WormBase
Molecular function	identical protein binding Inferred from physical interaction. Source: IntAct zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q17878-1 [UniParc]. Last modified May 1, 1999. Version 2. Checksum: C649B80E095082A9	FASTA	1,424	157,439
	10 20 30 40 50 60 MERVTVRMAR SDRRTPWGFG VTEAPDGAVL IVNVIGGSLA DRAGLRNGDV VDRLEDLDNL 70 80 90 100 110 120 DINAVDRLLV TAHEKIELIV TRQPSGAATR IWRPEVTENT GPGQDQTPYR VNLQHSSDTR 130 140 150 160 170 180 PPQGFNNSAL PFETDQRVKH MQYNSPLGIY SDKSAAEQYV QQTQGLGDNS GARAAAQRQD 190 200 210 220 230 240 EPAYLRSETL RLLKEQEHGS AGGAGTTLSN HPNPSGLPVC FMCTRPILGV MARAAGKNLH 250 260 270 280 290 300 GDCLSCATCG NSLRNVGHHF IEDKFYCDIH GTQRKHGGRP GMDPNIFVKS SPTAAQPVHI 310 320 330 340 350 360 QDSPRAAYHP QVNTARPVSV SPAPSAGSKT VTTHYHTPKT QGILSPGQRG VPTAAFGADL 370 380 390 400 410 420 SKSVTYGGGV GPGGTHYDSN RLSPAPSQYS TQSRNQSQQH YQQHVVQAPP PVPSNPPPSN 430 440 450 460 470 480 EQQSQSRVQN LPDSVRSAVS PRRSGKSPRQ WPPPAMPTTN RYWQIDPADA LKKEKVNYGE 490 500 510 520 530 540 DLVALIKEVE QSKEKEPKVK KEPKKGTRGA RRASNISKEQ VQQAFEEQRK RTERKEIKKL 550 560 570 580 590 600 EKEIKPKPEL KVEVPVEPLV VPTSKPLEEP CPEALPPPKI NDGIHWTVIH SPVLRSPSPA 610 620 630 640 650 660 KVTSEAAIPE SNGVVKPIPS YASQPIGISK TSTPQPFRPG SQVERPHYSS VGLKDVHAPV 670 680 690 700 710 720 PLPRSPQHSP QPVQSYIVRS SDANVTTSTN LQTTVTRQYT ENDNKSQFLQ QPHPDTIDSS 730 740 750 760 770 780 TSPIPTIRLN RHTKPEPSTP LSVPTVSIND IATSPIKITE PSRPWRASVS NSATSPIKIH 790 800 810 820 830 840 ESRVQPVDES RGLHRHEEKA QIETSTIKIH EPSSPPPSVH KFGAVNTRAA PAPVQFMQTP 850 860 870 880 890 900 RIAVKIHEPT GPSPTPPSTP SHPIKRDPKH FKKVDFSKTS PTVIPEWKDS ADIVDESDIL 910 920 930 940 950 960 TECSREDDSI SFLKAATYDG DESEMIDNNI DNKSDITSTF DIEEEEVDVV QDRERIRVVG 970 980 990 1000 1010 1020 RKGGEGGEAE KQWRQRAMEL LDDDAQTERD LRIVAALNER LQGLREMEDD DRVRAIECIA 1030 1040 1050 1060 1070 1080 RHQSELEQTQ TQLSTLLESA IVYLQNLRPE LELTEPIDND AKSLETVKFE PTRAEQRVNE 1090 1100 1110 1120 1130 1140 IRKKVLEDLE HLPILGDGMD SVPPPPPERK VFPFQSYQPI APQFPVPAAE SPVTQSLHDV 1150 1160 1170 1180 1190 1200 LDEFYSLRKP TPTQNVAQSS DTTAEDSRNF LASRLGQVMI DENKKAGGSN GSSQHHNQQG 1210 1220 1230 1240 1250 1260 SSYTKTSFER TTTETRPQQN TGAPRAGDFR GTGHLTTTTT TQQNGGRAPF CESCKQQIRG 1270 1280 1290 1300 1310 1320 AFVLATGKSW CPEHFVCANS SCRRRLLECG FVEEDGQKFC ESCFEQHIAP RCNKCSKPII 1330 1340 1350 1360 1370 1380 SDCLNALQKK WHPTCFTCAH CQKPFGNSAF YLEQGLPYCE QDWNALFTTK CVSCRYPIEA 1390 1400 1410 1420 GDRWVEALGN AFHSNCFTCA RCNHNLEGES FFAKNGQPFC RLHA

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.

Cross-references

Sequence databases
EMBLGenBankDDBJ	Z54235, Z54237 Genomic DNA. Translation: CAA90978.1. Z54237, Z54235 Genomic DNA. Translation: CAA90991.1.
PIR	T19156.
RefSeq	NP_001023371.1.
UniGene	Cel.17109
3D structure databases
HSSP	HSSP built from PDB template 1NYP based on UniProtKB P48059.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP:25328N.
IntAct	Q17878. 93 interactions.
Genome annotation databases
Ensembl	T11B7.4. Caenorhabditis elegans. [Contig view]
GeneID	177701.
NMPDR	fig|6239.3.peg.14389.
Organism-specific databases
WormBase	WBGene00001132. alp-1.
WormPep	T11B7.4d. CE03650. [WorfDB]
Phylogenomic databases
OMA	Q17878. GDESEMI.
Gene expression databases
ArrayExpress	Q17878.
Family and domain databases
InterPro	IPR001478. PDZ/DHR/GLGF. IPR006643. ZASP. IPR001781. Znf_LIM. [Graphical view]
Gene3D	G3DSA:2.10.110.10. Znf_LIM. 3 hits.
Pfam	PF00412. LIM. 4 hits. [Graphical view]
ProDom	PD000094. LIM. 4 hits. [Graphical view] [Entries sharing at least one domain]
SMART	SM00132. LIM. 4 hits. SM00228. PDZ. 1 hit. SM00735. ZM. 1 hit. [Graphical view]
PROSITE	PS00478. LIM_DOMAIN_1. 2 hits. PS50023. LIM_DOMAIN_2. 4 hits. PS50106. PDZ. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	897990.

Entry information

Entry name

Q17878_CAEEL

Accession

Primary (citable) accession number: Q17878
Secondary accession number(s): Q22391

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	May 1, 1999
Last modified:	June 16, 2009
This is version 84 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)