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Protein

Uncharacterized protein C09G1.4

Gene

C09G1.4

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C09G1.4
Gene namesi
ORF Names:C09G1.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiC09G1.4; CE43135; WBGene00007486.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 545545Uncharacterized protein C09G1.4PRO_0000065171Add
BLAST

Proteomic databases

PaxDbiQ17865.
PRIDEiQ17865.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
alp-1G5EFL53EBI-317562,EBI-316352
CELE_F57C9.4H2KYD44EBI-317562,EBI-326852
gei-18Q7K7J05EBI-317562,EBI-2315822
rimb-1Q9N4156EBI-317562,EBI-6538150
sorb-1O624825EBI-317562,EBI-325337
T04C9.1Q8MPT26EBI-317562,EBI-2315635
uso-1G5EGG04EBI-317562,EBI-311986

Protein-protein interaction databases

BioGridi46568. 8 interactions.
DIPiDIP-25627N.
IntActiQ17865. 41 interactions.
MINTiMINT-1064024.
STRINGi6239.C09G1.4.

Structurei

3D structure databases

ProteinModelPortaliQ17865.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini458 – 54083PDZPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 PDZ (DHR) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG266423.
HOGENOMiHOG000020781.
InParanoidiQ17865.
OMAiEMLMNSA.
OrthoDBiEOG7HMS15.

Family and domain databases

Gene3Di2.30.42.10. 1 hit.
InterProiIPR001478. PDZ.
[Graphical view]
SMARTiSM00228. PDZ. 1 hit.
[Graphical view]
SUPFAMiSSF50156. SSF50156. 1 hit.
PROSITEiPS50106. PDZ. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q17865-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSGNRQAPM PPPKPRNLGR GQFYQQGGYL TPQDSDTDSG ISADCDQGSP
60 70 80 90 100
RAAAGFGGTG FNGTVNGQQV NSQRRIPDLP PGAYQNYRSH SSADYLTPNS
110 120 130 140 150
ARKIASYSTT PRRLPLQPQQ QAPATATKAK YRVRFADEVD SGASTSSGTS
160 170 180 190 200
STHISPRNDP QEMLMNSAVG APQITSTFQQ PASYMQNSSD AQYKMNKIEY
210 220 230 240 250
PPVSRTPPVA CSSRTGTLQR TPNRRLPISS TPQPQPTYAD QMQSLPEPPP
260 270 280 290 300
YTIAMQRLRS VEQQPQESFR DAFIRKSVND TLQRRYRQRS SSLPRGNKSY
310 320 330 340 350
YEGIDIYDAQ PPIRPLPQQQ TSLMTVANQL PGSLDNLHIN NLNMRRRKLP
360 370 380 390 400
TAPLMGSSCQ LHLDNSDELT AYRALQFQMM QDELQRQQPP PQSFERPTLL
410 420 430 440 450
RRTNMPQQQS FNIPHITTTG PPPPAMGLSV PVQYDQGEYG TQSVRAQLVA
460 470 480 490 500
LDQRGFRRVL VEKMMPGPFG FYIATGVVAG QRAGIFISRV SLPSLSPMLT
510 520 530 540
VGDEIIYVDE EYVKGRSLEY VQSVIAGKTS VTITLLPAVG QPAIC
Length:545
Mass (Da):60,171
Last modified:September 22, 2009 - v3
Checksum:iBE7A3B2253DF8A22
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50176 Genomic DNA. Translation: CAA90541.2.
PIRiT19139.
RefSeqiNP_510621.2. NM_078220.3.
UniGeneiCel.9067.

Genome annotation databases

EnsemblMetazoaiC09G1.4; C09G1.4; WBGene00007486.
GeneIDi181679.
KEGGicel:CELE_C09G1.4.
UCSCiC09G1.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50176 Genomic DNA. Translation: CAA90541.2.
PIRiT19139.
RefSeqiNP_510621.2. NM_078220.3.
UniGeneiCel.9067.

3D structure databases

ProteinModelPortaliQ17865.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi46568. 8 interactions.
DIPiDIP-25627N.
IntActiQ17865. 41 interactions.
MINTiMINT-1064024.
STRINGi6239.C09G1.4.

Proteomic databases

PaxDbiQ17865.
PRIDEiQ17865.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC09G1.4; C09G1.4; WBGene00007486.
GeneIDi181679.
KEGGicel:CELE_C09G1.4.
UCSCiC09G1.4. c. elegans.

Organism-specific databases

CTDi181679.
WormBaseiC09G1.4; CE43135; WBGene00007486.

Phylogenomic databases

eggNOGiNOG266423.
HOGENOMiHOG000020781.
InParanoidiQ17865.
OMAiEMLMNSA.
OrthoDBiEOG7HMS15.

Miscellaneous databases

PROiQ17865.

Family and domain databases

Gene3Di2.30.42.10. 1 hit.
InterProiIPR001478. PDZ.
[Graphical view]
SMARTiSM00228. PDZ. 1 hit.
[Graphical view]
SUPFAMiSSF50156. SSF50156. 1 hit.
PROSITEiPS50106. PDZ. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiYTE4_CAEEL
AccessioniPrimary (citable) accession number: Q17865
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: September 22, 2009
Last modified: June 24, 2015
This is version 94 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.