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Protein
Submitted name:

SWI/SNF nucleosome remodeling complex component

Gene

swsn-9

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SWI/SNF nucleosome remodeling complex componentImported
Gene namesi
Name:swsn-9Imported
ORF Names:C01H6.7Imported, CELE_C01H6.7Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC01H6.7a; CE05190; WBGene00007256; swsn-9.

PTM / Processingi

Proteomic databases

EPDiQ17581.
PaxDbiQ17581.

Expressioni

Gene expression databases

ExpressionAtlasiQ17581. baseline and differential.

Interactioni

Protein-protein interaction databases

DIPiDIP-25642N.
IntActiQ17581. 1 interaction.
MINTiMINT-1123143.
STRINGi6239.C01H6.7a.2.

Structurei

3D structure databases

ProteinModelPortaliQ17581.
SMRiQ17581. Positions 151-240.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini172 – 23463BromoInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1828. Eukaryota.
ENOG410XRRI. LUCA.
GeneTreeiENSGT00530000063939.
HOGENOMiHOG000280704.
InParanoidiQ17581.
KOiK11723.
OMAiYFAFPVT.
PhylomeDBiQ17581.

Family and domain databases

Gene3Di1.20.920.10. 1 hit.
InterProiIPR001487. Bromodomain.
IPR021900. DUF3512.
[Graphical view]
PfamiPF00439. Bromodomain. 1 hit.
PF12024. DUF3512. 1 hit.
[Graphical view]
PRINTSiPR00503. BROMODOMAIN.
SMARTiSM00297. BROMO. 1 hit.
[Graphical view]
SUPFAMiSSF47370. SSF47370. 1 hit.
PROSITEiPS50014. BROMODOMAIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q17581-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPEGESRRSM VGIPPTRRAR GGNTPSTATP VVPRTSARAA KRVKKEEPEE
60 70 80 90 100
EEDYKNNNSD PEKSEEDESE ESGDEMTTPS RKTPGGGAGG RKKKRAPLTD
110 120 130 140 150
YHLKKKKILA RKAARDAEKE KEVEPEVQEE VPKEPTPPPP RKAPSFSSYL
160 170 180 190 200
PIQLMQDHIL RKLVEKDPEQ YFAFPVTPSM APDYRDIIKT PMDLQTIREN
210 220 230 240 250
IEDGKYASLP AMKEDCELIV SNAFQYNQPN TVFYLAAKRL SNLIAYYFGE
260 270 280 290 300
QYLRFLFHSL PMANKIPFEI VGIRPLAPVP KERTMNKRKA VVKDGMTSED
310 320 330 340 350
CLQVADPKVR ERLSAKLPEA NNPKNKKMGK LGFLSEKDGT VVLNVVAGDS
360 370 380 390 400
EDGKLENNAP RRVTIGDIVG PLEEGTPGMI QMADHRLFSQ APVNYLNYGP
410 420 430 440 450
YSSFAPMYDS TWATMTKEDT DLFLRTYGDK SNASDVMSMR RFVGDCPEFS
460 470 480 490 500
EIIGSLLDTL TDGEHSKTMK ELENAGKEVK EEVDNDEYKN ETVLSLIDDV
510 520 530 540 550
SSISNLGIET GFLNDIRQQV LVPAVESNIE NNIPEFMNEV NHMNVQQQLN
560 570 580 590 600
HSGQKVKDLA HIQEHRLVQQ PPPMIMSVQG AGQIEQKLAE NLQQHLAHQM
610 620 630
TTHAAPEAFV NDTMIHDAIG VDMDDGDLFS EFFVTQ
Length:636
Mass (Da):71,340
Last modified:November 1, 1996 - v1
Checksum:i02A5B089B8DCD663
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAA95779.1.
PIRiT18845.
RefSeqiNP_492041.1. NM_059640.6.
UniGeneiCel.17216.

Genome annotation databases

EnsemblMetazoaiC01H6.7a.1; C01H6.7a.1; WBGene00007256.
C01H6.7a.2; C01H6.7a.2; WBGene00007256.
GeneIDi172461.
KEGGicel:CELE_C01H6.7.
UCSCiC01H6.7. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAA95779.1.
PIRiT18845.
RefSeqiNP_492041.1. NM_059640.6.
UniGeneiCel.17216.

3D structure databases

ProteinModelPortaliQ17581.
SMRiQ17581. Positions 151-240.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25642N.
IntActiQ17581. 1 interaction.
MINTiMINT-1123143.
STRINGi6239.C01H6.7a.2.

Proteomic databases

EPDiQ17581.
PaxDbiQ17581.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC01H6.7a.1; C01H6.7a.1; WBGene00007256.
C01H6.7a.2; C01H6.7a.2; WBGene00007256.
GeneIDi172461.
KEGGicel:CELE_C01H6.7.
UCSCiC01H6.7. c. elegans.

Organism-specific databases

CTDi172461.
WormBaseiC01H6.7a; CE05190; WBGene00007256; swsn-9.

Phylogenomic databases

eggNOGiKOG1828. Eukaryota.
ENOG410XRRI. LUCA.
GeneTreeiENSGT00530000063939.
HOGENOMiHOG000280704.
InParanoidiQ17581.
KOiK11723.
OMAiYFAFPVT.
PhylomeDBiQ17581.

Miscellaneous databases

NextBioi875611.

Gene expression databases

ExpressionAtlasiQ17581. baseline and differential.

Family and domain databases

Gene3Di1.20.920.10. 1 hit.
InterProiIPR001487. Bromodomain.
IPR021900. DUF3512.
[Graphical view]
PfamiPF00439. Bromodomain. 1 hit.
PF12024. DUF3512. 1 hit.
[Graphical view]
PRINTSiPR00503. BROMODOMAIN.
SMARTiSM00297. BROMO. 1 hit.
[Graphical view]
SUPFAMiSSF47370. SSF47370. 1 hit.
PROSITEiPS50014. BROMODOMAIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ17581_CAEEL
AccessioniPrimary (citable) accession number: Q17581
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.