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Protein
Submitted name:

AmHNF-3-1 protein

Gene

AmHNF-3-1

Organism
Branchiostoma floridae (Florida lancelet) (Amphioxus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TranscriptionSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
AmHNF-3-1 proteinImported
Gene namesi
Name:AmHNF-3-1Imported
OrganismiBranchiostoma floridae (Florida lancelet) (Amphioxus)Imported
Taxonomic identifieri7739 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCephalochordataBranchiostomidaeBranchiostoma

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ17135.
SMRiQ17135. Positions 111-201.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini111 – 20595Fork-head DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains fork-head DNA-binding domain.SAAS annotation

Phylogenomic databases

HOVERGENiHBG006621.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR013638. Fork-head_N.
IPR001766. Fork_head_dom.
IPR018533. Forkhead_box_C.
IPR030456. TF_fork_head_CS_2.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Forkhead. 1 hit.
PF08430. Forkhead_N. 1 hit.
PF09354. HNF_C. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q17135-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSAPKGYPT GTTMNTMGMN TMSSMGGMNH ASYTGTGPVN PGAYSASAYS
60 70 80 90 100
GTMNGMGTGY PAAGGMGGLQ SYPAGSVNAM GTMQTMNNMA LNRNAIAERE
110 120 130 140 150
KAYRRSYTHA KPPYSYISLI TMSIQSSPNK MVTLAEIYQF IMDLFPYYRQ
160 170 180 190 200
NQQRWQNSIR HSLSFNDCFV KVPRTPDRPG KGSYWTLHPE AGNMFENGCY
210 220 230 240 250
LRRQKRFKCE KKLAMKMAQQ QAAPTPPTPG RELRRLADYH GSTPTTTSNG
260 270 280 290 300
ASTLQPLQPI NTPSPNPQEQ QQHQHHQHQH QQQHQQQPQV QTTQPQDMQQ
310 320 330 340 350
HAQQHQGLPA RPIPQQSSLP MSMGGYFSPE HLRAAHGFTH PFSISNLMSQ
360 370 380 390 400
EHKPDLKEYA AMGYSGYNSM SPTGVPKTTM SMDSMGTDYY QGYVPQHSQP

SSL
Length:403
Mass (Da):44,773
Last modified:November 1, 1996 - v1
Checksum:i520773C21C2E5E29
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96519 mRNA. Translation: CAA65368.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96519 mRNA. Translation: CAA65368.1.

3D structure databases

ProteinModelPortaliQ17135.
SMRiQ17135. Positions 111-201.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG006621.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR013638. Fork-head_N.
IPR001766. Fork_head_dom.
IPR018533. Forkhead_box_C.
IPR030456. TF_fork_head_CS_2.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00250. Forkhead. 1 hit.
PF08430. Forkhead_N. 1 hit.
PF09354. HNF_C. 1 hit.
[Graphical view]
PRINTSiPR00053. FORKHEAD.
SMARTiSM00339. FH. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00658. FORK_HEAD_2. 1 hit.
PS50039. FORK_HEAD_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ17135_BRAFL
AccessioniPrimary (citable) accession number: Q17135
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.