Q16DL2 (Q16DL2_ROSDO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ubiquinone biosynthesis protein UbiB EMBL ABG29931.1
EC=1.14.13.- EMBL ABG29931.1

Gene names

Name:	ubiB EMBL ABG29931.1
Ordered Locus Names:	RD1_0202 EMBL ABG29931.1

Organism

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) [Complete proteome] [HAMAP] EMBL ABG29931.1

Taxonomic identifier

375451 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Roseobacter › Roseobacter denitrificans

Protein attributes

Sequence length	515 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis By similarity. SAAS SAAS004147
Subcellular location	Cell inner membrane; Multi-pass membrane protein By similarity SAAS SAAS004147. Cell inner membrane; Single-pass membrane protein By similarity SAAS SAAS004147.

Ontologies

Keywords
Biological process	Ubiquinone biosynthesis SAAS SAAS004147
Cellular component	Cell inner membrane SAAS SAAS004147 Cell membrane Membrane
Domain	Transmembrane Transmembrane helix SAAS SAAS004147
Ligand	Ubiquinone EMBL ABG29931.1
Molecular function	Oxidoreductase EMBL ABG29931.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	ubiquinone biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	oxidoreductase activity Inferred from electronic annotation. Source: UniProtKB-KW transferase activity, transferring phosphorus-containing groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q16DL2 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: 43125B57773CD26C	FASTA	515	56,829
	10 20 30 40 50 60 MRGPHNIWRL IRTGATLERT GAMKVVLDAF EAPRAVRFVA RALGIPFKFL GYYGDPSMPP 70 80 90 100 110 120 ATRALTALGP AYIKFGQILS TRPDVVGDEL AVQLRVLQDK LPPFSVAVAK AEVSKELGVP 130 140 150 160 170 180 VDQVFSEFSE PVAAASIAQV HRARIASTGE DVAVKVLRPG IERAFNKDVD AFYLAARMVE 190 200 210 220 230 240 LFAPGARRLR PMDVIEHFDG VVQGELDLRL ESSAASEFAA TTKDDEGFQL PEIKWDLSAR 250 260 270 280 290 300 RVMTLGWAAG VPLGDNDAID AAGHNRVELG NRVLQLFLNH ALRDGYFHGD MHQGNLKVAP 310 320 330 340 350 360 NGDIVAYDFG IMGHIDEYTR RVYAEILFGF IRRDYKRVAE VHFEAGYVPA DKDVDEFARA 370 380 390 400 410 420 LRAVGEPIFG MDASKISMGR LLNYLFEVTE RFGMETRTEL ILLQRTMVVV EGVARSLNPQ 430 440 450 460 470 480 INIWEVASPV VSNYISQSIG PRATLKDLAK TARVLARFGP RLPVMVENAL IRTSNPQPVR 490 500 510 RENSWGKWIV GGLILGVTIG VSGSLTLIAV DLMFF

References

[1]

"The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism." Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H., Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K., O'huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T., Touchman J.W. J. Bacteriol. 189:683-690(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33942 / OCh 114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000362 Genomic DNA. Translation: ABG29931.1.
RefSeq	YP_680617.1. NC_008209.1.
3D structure databases
ProteinModelPortal	Q16DL2.
ModBase	Search...
Protein-protein interaction databases
STRING	375451.RD1_0202.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG29931; ABG29931; RD1_0202.
GeneID	4198191.
KEGG	rde:RD1_0202.
PATRIC	23358581. VBIRosDen86677_0195.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0661.
HOGENOM	HOG000264438.
KO	K03688.
OMA	TNEMINI.
ProtClustDB	CLSK933168.
Enzyme and pathway databases
BioCyc	RDEN375451:GJIZ-190-MONOMER.
Family and domain databases
InterPro	IPR011009. Kinase-like_dom. IPR010232. UbiB. IPR004147. UbiB_dom. [Graphical view]
Pfam	PF03109. ABC1. 1 hit. [Graphical view]
SUPFAM	SSF56112. Kinase_like. 1 hit.
TIGRFAMs	TIGR01982. UbiB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q16DL2_ROSDO

Accession

Primary (citable) accession number: Q16DL2

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)