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Q16DJ1 (Q16DJ1_ROSDO) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length298 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
Q16DJ1 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: AB06697C5EE900C8

FASTA29832,701
        10         20         30         40         50         60 
MTIKIGNAPC SWGVEFADDP RNPAWRDVLR ENAEAGYKGI ELGPVGYVPE DPAILADALA 

        70         80         90        100        110        120 
EYDLSLIGGV VFRPFHDPAA WDDVLDAAVR TCKALKAHGA EHLVLIDSTS PRRAGTAGRA 

       130        140        150        160        170        180 
NDAEQMDKAE WSAFRDRIAA VARIGAEDYG LTVGMHAHAA GFLDFEPELE RLMNEIDENT 

       190        200        210        220        230        240 
LKICFDTGHH SYAGFDPVAF MEKHIGRISY MHFKDIDPVV KADVIAKSTG FYDACGQGIF 

       250        260        270        280        290 
CNLGDGDVDF PRVREILLES GFDGWCTVEQ DCDPTLPDTD SLRDAKLNRA YLETIGFS

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References

[1]"The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism."
Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H., Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K., O'huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T., Touchman J.W.
J. Bacteriol. 189:683-690(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33942 / OCh 114.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000362 Genomic DNA. Translation: ABG29952.1.
RefSeqYP_680638.1. NC_008209.1.

3D structure databases

ProteinModelPortalQ16DJ1.
ModBaseSearch...

Protein-protein interaction databases

STRING375451.RD1_0223.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG29952; ABG29952; RD1_0223.
GeneID4198173.
KEGGrde:RD1_0223.
PATRIC23358625. VBIRosDen86677_0217.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1082.
HOGENOMHOG000239719.
KOK03335.
OMAYEWIELG.
ProtClustDBCLSK2776169.

Enzyme and pathway databases

BioCycRDEN375451:GJIZ-211-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMSSF51658. Xyl_isomerase-like_TIM-brl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ16DJ1_ROSDO
AccessionPrimary (citable) accession number: Q16DJ1
Entry history
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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