Q16AL3 (Q16AL3_ROSDO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Peptide deformylase, putative EMBL ABG30980.1
EC=3.5.1.88 EMBL ABG30980.1

Gene names

Name:	def EMBL ABG30980.1
Ordered Locus Names:	RD1_1338

Organism

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) [Complete proteome] [HAMAP] EMBL ABG30980.1

Taxonomic identifier

375451 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Roseobacter

Protein attributes

Sequence length	165 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. SAAS SAAS000181

Ontologies

Keywords
Biological process	Protein biosynthesis SAAS SAAS000181
Ligand	Metal-binding SAAS SAAS000181
Molecular function	Hydrolase SAAS SAAS000181 EMBL ABG30980.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	iron ion binding Inferred from electronic annotation. Source: InterPro peptide deformylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q16AL3 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: 2E17CC67821D842A	FASTA	165	18,489
	10 20 30 40 50 60 MSVRAYLKWP DARLRTAAAD VAEITPEVLG IWDDMIDTMD AMPGVGLAAP QIGVMLRLAV 70 80 90 100 110 120 VDASDTRDRR IRLANPEIIE ASAIMNDHEE ASPNLPGVFA KIRRPRGVTV RFMDETGTYV 130 140 150 160 QRDFVGLEAT SVQHQIDHLQ GKMYFDNLSK VKRDMLLRKA RKLNG

References

[1]

"The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism." Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H., Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K., O'Huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T., Touchman J.W. J. Bacteriol. 189:683-690(2007) [PubMed: 17098896] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000362 Genomic DNA. Translation: ABG30980.1.
RefSeq	YP_681666.1. NC_008209.1.
3D structure databases
ProteinModelPortal	Q16AL3.
ModBase	Search...
Protein-protein interaction databases
STRING	Q16AL3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4197351.
GenomeReviews	Gene locus RD1_1338 in contig CP000362_GR.
KEGG	rde:RD1_1338.
NMPDR	fig|375451.6.peg.1252.
PATRIC	23360805. VBIRosDen86677_1294.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0242.
HOGENOM	HBG665227.
OMA	QHQIDHL.
PhylomeDB	Q16AL3.
ProtClustDB	CLSK934097.
Enzyme and pathway databases
BioCyc	RDEN375451:RD1_1338-MONOMER.
Family and domain databases
HAMAP	MF_00163. Pep_deformylase. [Tree]
InterPro	IPR000181. Fmet_deformylase. IPR023635. Peptide_deformylase. [Graphical view]
Gene3D	G3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KO	K01462.
PANTHER	PTHR10458. Fmet_deformylase. 1 hit.
Pfam	PF01327. Pep_deformylase. 1 hit. [Graphical view]
PIRSF	PIRSF004749. Pep_def. 1 hit.
PRINTS	PR01576. PDEFORMYLASE.
SUPFAM	SSF56420. Fmet_deformylase. 1 hit.
TIGRFAMs	TIGR00079. Pept_deformyl. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q16AL3_ROSDO

Accession

Primary (citable) accession number: Q16AL3

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	January 25, 2012
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)