ID CDO1_HUMAN Reviewed; 200 AA. AC Q16878; B2RAK4; P78513; Q6FHZ8; Q8TB64; DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot. DT 27-SEP-2005, sequence version 2. DT 24-JAN-2024, entry version 182. DE RecName: Full=Cysteine dioxygenase type 1; DE EC=1.13.11.20 {ECO:0000269|PubMed:17135237}; DE AltName: Full=Cysteine dioxygenase type I; DE Short=CDO; DE Short=CDO-I; GN Name=CDO1; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], AND VARIANT ILE-45. RC TISSUE=Liver; RX PubMed=7524679; DOI=10.1016/0167-4838(94)90144-9; RA McCann K.P., Akbari M.T., Williams A.C., Ramsden D.B.; RT "Human cysteine dioxygenase type I: primary structure derived from base RT sequencing of cDNA."; RL Biochim. Biophys. Acta 1209:107-110(1994). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], INDUCTION, AND TISSUE SPECIFICITY. RC TISSUE=Liver; RX PubMed=10427686; DOI=10.1271/bbb.63.1017; RA Tsuboyama-Kasaoka N., Hosokawa Y., Kodama H., Matsumoto A., Oka J., RA Totani M.; RT "Human cysteine dioxygenase gene: structural organization, tissue-specific RT expression and downregulation by phorbol 12-myristate 13-acetate."; RL Biosci. Biotechnol. Biochem. 63:1017-1024(1999). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT ILE-45. RX PubMed=9497919; DOI=10.1136/mp.50.5.269; RA Ramsden D.B., Kapadi A.L., Fitch N.J., Farmer M.J., Bennett P., RA Williams A.C.; RT "Human cysteine dioxygenase type I (CDO-I; EC 1.13.11.20): 5' flanking RT region and intron-exon structure of the gene."; RL Mol. Pathol. 50:269-271(1997). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S., Neubert P., RA Kstrang K., Schatten R., Shen B., Henze S., Mar W., Korn B., Zuo D., Hu Y., RA LaBaer J.; RT "Cloning of human full open reading frames in Gateway(TM) system entry RT vector (pDONR201)."; RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Liver; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Brain; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [8] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21269460; DOI=10.1186/1752-0509-5-17; RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., RA Bennett K.L., Superti-Furga G., Colinge J.; RT "Initial characterization of the human central proteome."; RL BMC Syst. Biol. 5:17-17(2011). RN [9] RP X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS) OF 2-200 OF WILD-TYPE AND MUTANTS RP ARG-60; CYS-93; TYR-157 AND CYS-164 IN COMPLEX WITH L-CYSTEINE AND DIVALENT RP METAL IONS, CROSS-LINK, SUBUNIT, IDENTIFICATION BY MASS SPECTROMETRY, RP FUNCTION, COFACTOR, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, PTM, RP MUTAGENESIS OF ARG-60; CYS-93; TYR-157 AND CYS-164, AND IRON-BINDING SITES. RX PubMed=17135237; DOI=10.1074/jbc.m609337200; RA Ye S., Wu X., Wei L., Tang D., Sun P., Bartlam M., Rao Z.; RT "An insight into the mechanism of human cysteine dioxygenase. Key roles of RT the thioether-bonded tyrosine-cysteine cofactor."; RL J. Biol. Chem. 282:3391-3402(2007). RN [10] RP VARIANT [LARGE SCALE ANALYSIS] GLN-143. RX PubMed=16959974; DOI=10.1126/science.1133427; RA Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., RA Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., RA Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V., RA Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., RA Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., RA Velculescu V.E.; RT "The consensus coding sequences of human breast and colorectal cancers."; RL Science 314:268-274(2006). CC -!- FUNCTION: Catalyzes the oxidation of cysteine to cysteine sulfinic acid CC with addition of molecular dioxygen. {ECO:0000269|PubMed:17135237}. CC -!- CATALYTIC ACTIVITY: CC Reaction=L-cysteine + O2 = 3-sulfino-L-alanine + H(+); CC Xref=Rhea:RHEA:20441, ChEBI:CHEBI:15378, ChEBI:CHEBI:15379, CC ChEBI:CHEBI:35235, ChEBI:CHEBI:61085; EC=1.13.11.20; CC Evidence={ECO:0000269|PubMed:17135237}; CC PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:20442; CC Evidence={ECO:0000305|PubMed:17135237}; CC -!- COFACTOR: CC Name=Fe(2+); Xref=ChEBI:CHEBI:29033; CC Evidence={ECO:0000269|PubMed:17135237}; CC Name=Ni(2+); Xref=ChEBI:CHEBI:49786; CC Evidence={ECO:0000250|UniProtKB:P60334}; CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105; CC Evidence={ECO:0000269|PubMed:17135237}; CC Note=Binds 1 Fe(2+) cation per subunit. Zn(2+) can be used to a much CC lesser extent (PubMed:17135237). Ni(2+) can be used to a lesser extent CC (By similarity). {ECO:0000250|UniProtKB:P60334, CC ECO:0000269|PubMed:17135237}; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=3.1 mM for L-cysteine {ECO:0000269|PubMed:17135237}; CC -!- PATHWAY: Organosulfur biosynthesis; taurine biosynthesis; hypotaurine CC from L-cysteine: step 1/2. CC -!- SUBUNIT: Monomer. {ECO:0000269|PubMed:17135237}. CC -!- TISSUE SPECIFICITY: Highly expressed in liver and placenta. Low CC expression in heart, brain and pancreas. Also detected in CC hepatoblastoma Hep-G2 cells. {ECO:0000269|PubMed:10427686}. CC -!- INDUCTION: In hepatoblastoma Hep-G2 cells, down-regulated by phorbol CC 12-myristate 13-acetate (PMA). {ECO:0000269|PubMed:10427686}. CC -!- PTM: The thioether cross-link between Cys-93 and Tyr-157 plays a CC structural role through stabilizing the Fe(2+) ion, and prevents the CC production of highly damaging free hydroxyl radicals by holding the CC oxygen radical via hydroxyl hydrogen. {ECO:0000269|PubMed:17135237}. CC -!- SIMILARITY: Belongs to the cysteine dioxygenase family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; Z31357; CAA83234.1; -; mRNA. DR EMBL; Z23010; CAA80552.1; -; mRNA. DR EMBL; D85782; BAA12873.1; -; Genomic_DNA. DR EMBL; D85777; BAA12872.1; -; mRNA. DR EMBL; AK314231; BAG36901.1; -; mRNA. DR EMBL; U80055; AAB58352.1; -; Genomic_DNA. DR EMBL; U60232; AAB58352.1; JOINED; Genomic_DNA. DR EMBL; U78979; AAB58352.1; JOINED; Genomic_DNA. DR EMBL; CR536540; CAG38777.1; -; mRNA. DR EMBL; CH471086; EAW48957.1; -; Genomic_DNA. DR EMBL; BC024241; AAH24241.1; -; mRNA. DR CCDS; CCDS4121.1; -. DR PIR; S50192; S50192. DR RefSeq; NP_001310494.1; NM_001323565.1. DR RefSeq; NP_001310495.1; NM_001323566.1. DR RefSeq; NP_001310496.1; NM_001323567.1. DR RefSeq; NP_001792.2; NM_001801.2. DR PDB; 2IC1; X-ray; 2.70 A; A=1-200. DR PDB; 6BGF; X-ray; 2.25 A; A=2-200. DR PDB; 6BGM; X-ray; 2.21 A; A=2-200. DR PDB; 6BPR; X-ray; 1.96 A; A=2-200. DR PDB; 6BPS; X-ray; 2.10 A; A=2-200. DR PDB; 6BPT; X-ray; 2.40 A; A=2-200. DR PDB; 6BPU; X-ray; 1.80 A; A=2-200. DR PDB; 6BPV; X-ray; 1.95 A; A=2-200. DR PDB; 6BPW; X-ray; 2.43 A; A=2-200. DR PDB; 6BPX; X-ray; 2.15 A; A=2-200. DR PDB; 6CDH; X-ray; 1.82 A; A=2-200. DR PDB; 6CDN; X-ray; 2.06 A; A=2-200. DR PDB; 6E87; X-ray; 1.95 A; A=2-200. DR PDB; 6N42; X-ray; 2.20 A; A=2-200. DR PDB; 6N43; X-ray; 2.29 A; A=2-200. DR PDBsum; 2IC1; -. DR PDBsum; 6BGF; -. DR PDBsum; 6BGM; -. DR PDBsum; 6BPR; -. DR PDBsum; 6BPS; -. DR PDBsum; 6BPT; -. DR PDBsum; 6BPU; -. DR PDBsum; 6BPV; -. DR PDBsum; 6BPW; -. DR PDBsum; 6BPX; -. DR PDBsum; 6CDH; -. DR PDBsum; 6CDN; -. DR PDBsum; 6E87; -. DR PDBsum; 6N42; -. DR PDBsum; 6N43; -. DR AlphaFoldDB; Q16878; -. DR SMR; Q16878; -. DR BioGRID; 107468; 14. DR IntAct; Q16878; 9. DR STRING; 9606.ENSP00000250535; -. DR DrugBank; DB04339; Carbocisteine. DR DrugBank; DB00151; Cysteine. DR DrugBank; DB00157; NADH. DR iPTMnet; Q16878; -. DR PhosphoSitePlus; Q16878; -. DR BioMuta; CDO1; -. DR DMDM; 76800649; -. DR EPD; Q16878; -. DR jPOST; Q16878; -. DR MassIVE; Q16878; -. DR PaxDb; 9606-ENSP00000250535; -. DR PeptideAtlas; Q16878; -. DR ProteomicsDB; 61117; -. DR Antibodypedia; 25433; 202 antibodies from 29 providers. DR DNASU; 1036; -. DR Ensembl; ENST00000250535.5; ENSP00000250535.4; ENSG00000129596.5. DR GeneID; 1036; -. DR KEGG; hsa:1036; -. DR MANE-Select; ENST00000250535.5; ENSP00000250535.4; NM_001801.3; NP_001792.2. DR UCSC; uc003krg.4; human. DR AGR; HGNC:1795; -. DR CTD; 1036; -. DR DisGeNET; 1036; -. DR GeneCards; CDO1; -. DR HGNC; HGNC:1795; CDO1. DR HPA; ENSG00000129596; Tissue enhanced (choroid plexus, liver). DR MIM; 603943; gene. DR neXtProt; NX_Q16878; -. DR OpenTargets; ENSG00000129596; -. DR PharmGKB; PA26327; -. DR VEuPathDB; HostDB:ENSG00000129596; -. DR eggNOG; KOG4064; Eukaryota. DR GeneTree; ENSGT00390000018226; -. DR HOGENOM; CLU_079443_1_0_1; -. DR InParanoid; Q16878; -. DR OMA; MLLCWGE; -. DR OrthoDB; 314969at2759; -. DR PhylomeDB; Q16878; -. DR TreeFam; TF105636; -. DR BioCyc; MetaCyc:HS05299-MONOMER; -. DR BRENDA; 1.13.11.20; 2681. DR PathwayCommons; Q16878; -. DR Reactome; R-HSA-1614558; Degradation of cysteine and homocysteine. DR SignaLink; Q16878; -. DR SIGNOR; Q16878; -. DR UniPathway; UPA00012; UER00537. DR BioGRID-ORCS; 1036; 14 hits in 1153 CRISPR screens. DR ChiTaRS; CDO1; human. DR EvolutionaryTrace; Q16878; -. DR GenomeRNAi; 1036; -. DR Pharos; Q16878; Tbio. DR PRO; PR:Q16878; -. DR Proteomes; UP000005640; Chromosome 5. DR RNAct; Q16878; Protein. DR Bgee; ENSG00000129596; Expressed in calcaneal tendon and 180 other cell types or tissues. DR GO; GO:0005829; C:cytosol; TAS:UniProtKB. DR GO; GO:0017172; F:cysteine dioxygenase activity; IDA:UniProtKB. DR GO; GO:0008198; F:ferrous iron binding; IDA:UniProtKB. DR GO; GO:0016151; F:nickel cation binding; ISS:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; IDA:UniProtKB. DR GO; GO:0006534; P:cysteine metabolic process; TAS:UniProtKB. DR GO; GO:0006954; P:inflammatory response; TAS:UniProtKB. DR GO; GO:0019448; P:L-cysteine catabolic process; IBA:GO_Central. DR GO; GO:0007595; P:lactation; IEA:Ensembl. DR GO; GO:0043200; P:response to amino acid; IEA:Ensembl. DR GO; GO:0051591; P:response to cAMP; IEA:Ensembl. DR GO; GO:0045471; P:response to ethanol; IEA:Ensembl. DR GO; GO:0033762; P:response to glucagon; IEA:Ensembl. DR GO; GO:0051384; P:response to glucocorticoid; IEA:Ensembl. DR GO; GO:0000097; P:sulfur amino acid biosynthetic process; TAS:UniProtKB. DR GO; GO:0042412; P:taurine biosynthetic process; TAS:UniProtKB. DR CDD; cd10548; cupin_CDO; 1. DR Gene3D; 2.60.120.10; Jelly Rolls; 1. DR InterPro; IPR010300; CDO_1. DR InterPro; IPR014710; RmlC-like_jellyroll. DR InterPro; IPR011051; RmlC_Cupin_sf. DR PANTHER; PTHR12918; CYSTEINE DIOXYGENASE; 1. DR PANTHER; PTHR12918:SF1; CYSTEINE DIOXYGENASE TYPE 1; 1. DR Pfam; PF05995; CDO_I; 1. DR SUPFAM; SSF51182; RmlC-like cupins; 1. DR Genevisible; Q16878; HS. PE 1: Evidence at protein level; KW 3D-structure; Dioxygenase; Iron; Metal-binding; Oxidoreductase; KW Reference proteome; Thioether bond. FT CHAIN 1..200 FT /note="Cysteine dioxygenase type 1" FT /id="PRO_0000206606" FT BINDING 86 FT /ligand="Fe cation" FT /ligand_id="ChEBI:CHEBI:24875" FT /ligand_note="catalytic" FT /evidence="ECO:0000269|PubMed:17135237" FT BINDING 88 FT /ligand="Fe cation" FT /ligand_id="ChEBI:CHEBI:24875" FT /ligand_note="catalytic" FT /evidence="ECO:0000269|PubMed:17135237" FT BINDING 140 FT /ligand="Fe cation" FT /ligand_id="ChEBI:CHEBI:24875" FT /ligand_note="catalytic" FT /evidence="ECO:0000269|PubMed:17135237" FT CROSSLNK 93..157 FT /note="3'-(S-cysteinyl)-tyrosine (Cys-Tyr)" FT /evidence="ECO:0000269|PubMed:17135237" FT VARIANT 45 FT /note="T -> I (in dbSNP:rs1042867)" FT /evidence="ECO:0000269|PubMed:7524679, FT ECO:0000269|PubMed:9497919" FT /id="VAR_023536" FT VARIANT 143 FT /note="E -> Q (in a colorectal cancer sample; somatic FT mutation)" FT /evidence="ECO:0000269|PubMed:16959974" FT /id="VAR_036170" FT MUTAGEN 60 FT /note="R->Q: Reduces enzyme activity by 70%. Reduces iron FT and zinc incorporation by 50%." FT /evidence="ECO:0000269|PubMed:17135237" FT MUTAGEN 93 FT /note="C->S: Reduces enzyme activity and iron incorporation FT by 50%. Zinc incorporation increased by 20%." FT /evidence="ECO:0000269|PubMed:17135237" FT MUTAGEN 157 FT /note="Y->F: Almost total loss of enzyme activity and iron FT incorporation. Reduces zinc incorporation by 20%." FT /evidence="ECO:0000269|PubMed:17135237" FT MUTAGEN 164 FT /note="C->S: Reduces enzyme activity by 20%. Little effect FT on iron incorporation. No effect on zinc incorporation." FT /evidence="ECO:0000269|PubMed:17135237" FT CONFLICT 137 FT /note="I -> V (in Ref. 7; AAH24241)" FT /evidence="ECO:0000305" FT HELIX 12..22 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 24..26 FT /evidence="ECO:0007829|PDB:6BPU" FT HELIX 30..39 FT /evidence="ECO:0007829|PDB:6BPU" FT HELIX 44..47 FT /evidence="ECO:0007829|PDB:6BPU" FT HELIX 48..50 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 55..57 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 59..64 FT /evidence="ECO:0007829|PDB:6BPU" FT HELIX 66..68 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 72..77 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 93..100 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 102..107 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 119..124 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 130..133 FT /evidence="ECO:0007829|PDB:6BPU" FT TURN 135..137 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 139..145 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 147..149 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 151..156 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 162..167 FT /evidence="ECO:0007829|PDB:6BPU" FT TURN 169..171 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 174..178 FT /evidence="ECO:0007829|PDB:6BPU" FT STRAND 182..184 FT /evidence="ECO:0007829|PDB:6BPU" SQ SEQUENCE 200 AA; 22972 MW; E4EF87221D05C14D CRC64; MEQTEVLKPR TLADLIRILH QLFAGDEVNV EEVQAIMEAY ESDPTEWAMY AKFDQYRYTR NLVDQGNGKF NLMILCWGEG HGSSIHDHTN SHCFLKMLQG NLKETLFAWP DKKSNEMVKK SERVLRENQC AYINDSIGLH RVENISHTEP AVSLHLYSPP FDTCHAFDQR TGHKNKVTMT FHSKFGIRTP NATSGSLENN //