Reviewed,
UniProtKB/Swiss-Prot Q16720 (AT2B3_HUMAN)
Last modified
November 3, 2009.
Version 97.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Plasma membrane calcium-transporting ATPase 3 Short name=PMCA3 EC=3.6.3.8 Alternative name(s): Plasma membrane calcium ATPase isoform 3 Plasma membrane calcium pump isoform 3 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Complete proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1220 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium out of the cell. |
| Catalytic activity | ATP + H2O + Ca2+(Cis) = ADP + phosphate + Ca2+(Trans). |
| Subcellular location | |
| Tissue specificity | Isoforms XE and XB are the most abundant isoforms and are detected at low levels in brain and fetal skeletal muscle. The other isoforms are only found at lower levels and not in fetal tissues. |
| Sequence similarities | Belongs to the cation transport ATPase (P-type) family. Type IIB subfamily. |
Ontologies
Alternative products
| This entry describes 8 isoforms produced by alternative splicing. [Align] [Select] Note: There is a combination of two alternatively spliced domains at N-terminal site A (X and Z) and at C-terminal site C (A, B, E and G). The splice sites have mostly been studied independently. Full isoforms so far detected are isoform XA and isoform XB. Experimental confirmation may be lacking for some isoforms. | ||||||
| Isoform XB (identifier: Q16720-1) Also known as: AIICI; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform XA (identifier: Q16720-2) Also known as: AIICII; The sequence of this isoform differs from the canonical sequence as follows: 1115-1220: IRVVKAFRSS...SPLHSVETSL → MEVVSTFKRS...AGNPGGESVP | ||||||
| Isoform ZA (identifier: Q16720-3) Also known as: AICII; The sequence of this isoform differs from the canonical sequence as follows: 306-319: Missing. 1115-1220: IRVVKAFRSS...SPLHSVETSL → MEVVSTFKRS...AGNPGGESVP | ||||||
| Isoform ZB (identifier: Q16720-4) Also known as: AICI; The sequence of this isoform differs from the canonical sequence as follows: 306-319: Missing. | ||||||
| Isoform XE (identifier: Q16720-5) Also known as: AIICV; The sequence of this isoform differs from the canonical sequence as follows: 1115-1220: IRVVKAFRSS...SPLHSVETSL → MEVVSTFKRS...NPTSAAGSES | ||||||
| Isoform ZE (identifier: Q16720-6) Also known as: AICV; The sequence of this isoform differs from the canonical sequence as follows: 306-319: Missing. 1115-1220: IRVVKAFRSS...SPLHSVETSL → MEVVSTFKRS...NPTSAAGSES | ||||||
| Isoform XG (identifier: Q16720-7) Also known as: AIICVII; The sequence of this isoform differs from the canonical sequence as follows: 1115-1220: IRVVKAFRSS...SPLHSVETSL → VCWDGKKMLRTTEVG | ||||||
| Isoform ZG (identifier: Q16720-8) Also known as: AICVII; The sequence of this isoform differs from the canonical sequence as follows: 306-319: Missing. 1115-1220: IRVVKAFRSS...SPLHSVETSL → VCWDGKKMLRTTEVG |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1220 | 1220 | Plasma membrane calcium-transporting ATPase 3 | PRO_0000046218 | |||||
Regions | |||||||||
| Topological domain | 1 – 97 | 97 | Cytoplasmic Potential | ||||||
| Transmembrane | 98 – 118 | 21 | Potential | ||||||
| Topological domain | 119 – 155 | 37 | Extracellular Potential | ||||||
| Transmembrane | 156 – 176 | 21 | Potential | ||||||
| Topological domain | 177 – 364 | 188 | Cytoplasmic Potential | ||||||
| Transmembrane | 365 – 384 | 20 | Potential | ||||||
| Topological domain | 385 – 417 | 33 | Extracellular Potential | ||||||
| Transmembrane | 418 – 435 | 18 | Potential | ||||||
| Topological domain | 436 – 849 | 414 | Cytoplasmic Potential | ||||||
| Transmembrane | 850 – 869 | 20 | Potential | ||||||
| Topological domain | 870 – 879 | 10 | Extracellular Potential | ||||||
| Transmembrane | 880 – 900 | 21 | Potential | ||||||
| Topological domain | 901 – 920 | 20 | Cytoplasmic Potential | ||||||
| Transmembrane | 921 – 943 | 23 | Potential | ||||||
| Topological domain | 944 – 961 | 18 | Extracellular Potential | ||||||
| Transmembrane | 962 – 983 | 22 | Potential | ||||||
| Topological domain | 984 – 1002 | 19 | Cytoplasmic Potential | ||||||
| Transmembrane | 1003 – 1024 | 22 | Potential | ||||||
| Topological domain | 1025 – 1034 | 10 | Extracellular Potential | ||||||
| Transmembrane | 1035 – 1056 | 22 | Potential | ||||||
| Topological domain | 1057 – 1220 | 164 | Cytoplasmic Potential | ||||||
| Region | 1097 – 1114 | 18 | Calmodulin-binding subdomain A By similarity | ||||||
| Region | 1115 – 1124 | 10 | Calmodulin-binding subdomain B By similarity | ||||||
| Compositional bias | 297 – 300 | 4 | Poly-Glu | ||||||
| Compositional bias | 1174 – 1179 | 6 | Poly-Pro | ||||||
Sites | |||||||||
| Active site | 473 | 1 | 4-aspartylphosphate intermediate By similarity | ||||||
| Metal binding | 794 | 1 | Magnesium By similarity | ||||||
| Metal binding | 798 | 1 | Magnesium By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1113 | 1 | Phosphothreonine; by PKC By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 306 – 319 | 14 | Missing in isoform ZA, isoform ZB, isoform ZE and isoform ZG. | VSP_000392 | |||||
| Alternative sequence | 1115 – 1220 | 106 | IRVVK…VETSL → MEVVSTFKRSGSVQGAVRRR SSVLSQLHDVTNLSTPTHAI LSAANPTSAAGNPGGESVP in isoform XA and isoform ZA. | VSP_000393 | |||||
| Alternative sequence | 1115 – 1220 | 106 | IRVVK…VETSL → MEVVSTFKRSGSVQGAVRRR SSVLSQLHDVTNLSTPTHAI LSAANPTSAAGSES in isoform XE and isoform ZE. | VSP_000394 | |||||
| Alternative sequence | 1115 – 1220 | 106 | IRVVK…VETSL → VCWDGKKMLRTTEVG in isoform XG and isoform ZG. | VSP_000395 | |||||
| Natural variant | 198 | 1 | I → M: dbSNP rs2269409. | VAR_027928 | |||||
Experimental info | |||||||||
| Sequence conflict | 587 | 1 | I → V in AAB09762. Ref.1 | ||||||
| Sequence conflict | 587 | 1 | I → V in AAB38530. Ref.1 | ||||||
| Sequence conflict | 654 | 1 | S → Y in AAB09762. Ref.1 | ||||||
| Sequence conflict | 654 | 1 | S → Y in AAB38530. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Primary structure of human plasma membrane Ca(2+)-ATPase isoform 3." Brown B., Hilfiker H., Demarco S.J., Zacharias D.A., Greenwood T.M., Carafoli E., Strehler E.E. Biochim. Biophys. Acta 1283:10-13(1996) [PubMed: 8765088] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS XA AND XB). Tissue: Brain. |
| [2] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | "Localization of two genes encoding plasma membrane Ca2+ ATPases isoforms 2 (ATP2B2) and 3 (ATP2B3) to human chromosomes 3p26-->p25 and Xq28, respectively." Wang M.G., Yi H., Hilfiker H., Carafoli E., Strehler E.E., McBride O.W. Cytogenet. Cell Genet. 67:41-45(1994) [PubMed: 8187550] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-319 (ISOFORM X). |
| [4] | "Comparative genome sequence analysis of the Bpa/Str region in mouse and man." Mallon A.-M., Platzer M., Bate R., Gloeckner G., Botcherby M.R.M., Nordsiek G., Strivens M.A., Kioschis P., Dangel A., Cunningham D., Straw R.N.A., Weston P., Gilbert M., Fernando S., Goodall K., Hunter G., Greystrong J.S., Clarke D. Brown S.D.M.Genome Res. 10:758-775(2000) [PubMed: 10854409] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-1053 (ISOFORM X). |
| [5] | "Quantitative analysis of alternative splicing options of human plasma membrane calcium pump genes." Stauffer T.P., Hilfiker H., Carafoli E., Strehler E.E. J. Biol. Chem. 268:25993-26003(1993) [PubMed: 8245032] [Abstract] Cited for: PARTIAL NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A; E AND G). Tissue: Brain cortex. |
| [6] | Erratum Stauffer T.P., Hilfiker H., Carafoli E., Strehler E.E. J. Biol. Chem. 269:32022-32022(1994) [PubMed: 7989379] [Abstract] |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| U57971 mRNA. Translation: AAB09762.1. U60414 mRNA. Translation: AAB38530.1. AF060498, AF060496, AF060497 Genomic DNA. Translation: AAC15078.1. U82695 Genomic DNA. No translation available. U15689 mRNA. Translation: AAA60986.1. U15690 mRNA. Translation: AAA60987.1. | |
| IPI | IPI00003831. IPI00219256. IPI00219257. IPI00219258. IPI00219259. IPI00219260. IPI00219261. IPI00219262. |
| RefSeq | NP_001001344.1. NP_068768.2. |
| UniGene | Hs.533956 Hs.658008 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1EUL based on UniProtKB P04191. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q16720. |
PTM databases | |
| PhosphoSite | Q16720. |
Proteomic databases | |
| PRIDE | Q16720. |
Genome annotation databases | |
| Ensembl | ENST00000263519; ENSP00000263519; ENSG00000067842; Homo sapiens. [Genome view] ENST00000328831; ENSP00000328157; ENSG00000067842; Homo sapiens. [Genome view] ENST00000349466; ENSP00000343886; ENSG00000067842; Homo sapiens. [Genome view] ENST00000359149; ENSP00000352062; ENSG00000067842; Homo sapiens. [Genome view] ENST00000370181; ENSP00000359200; ENSG00000067842; Homo sapiens. [Genome view] ENST00000370186; ENSP00000359205; ENSG00000067842; Homo sapiens. [Genome view] ENST00000393842; ENSP00000377425; ENSG00000067842; Homo sapiens. [Genome view] |
| GeneID | 492. |
| KEGG | hsa:492. |
| UCSC | uc004fhs.1. human. uc004fht.1. human. |
Organism-specific databases | |
| CTD | 492. |
| GeneCards | GC0XP152436. |
| H-InvDB | HIX0017131. |
| HGNC | HGNC:816. ATP2B3. |
| HPA | CAB005607. HPA001583. |
| MIM | 300014. gene. |
| PharmGKB | PA25109. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | Q16720. |
| HOVERGEN | Q16720. |
| OMA | MSTVIRM. |
Enzyme and pathway databases | |
| BRENDA | 3.6.3.8. 247. |
Gene expression databases | |
| ArrayExpress | Q16720. |
| Bgee | Q16720. |
| CleanEx | HS_ATP2B3. |
| Genevestigator | Q16720. |
| GermOnline | ENSG00000067842. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR008250. ATPase_P-typ_ATPase-assoc-reg. IPR006408. ATPase_P-typ_Ca-transp_PMCA. IPR006068. ATPase_P-typ_cation-transptr_C. IPR004014. ATPase_P-typ_cation-transptr_N. IPR001757. ATPase_P-typ_ion-transptr. IPR018303. ATPase_P-typ_P_site. IPR005834. Dehalogen-like_hydro. [Graphical view] |
| PANTHER | PTHR11939. ATPase_P. 1 hit. |
| Pfam | PF00689. Cation_ATPase_C. 1 hit. PF00690. Cation_ATPase_N. 1 hit. PF00122. E1-E2_ATPase. 1 hit. PF00702. Hydrolase. 1 hit. [Graphical view] |
| PRINTS | PR00119. CATATPASE. |
| TIGRFAMs | TIGR01517. ATPase-IIB_Ca. 1 hit. TIGR01494. ATPase_P-type. 4 hits. |
| PROSITE | PS00154. ATPASE_E1_E2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 2065. |
| SOURCE | Search... |
Entry information
| Entry name | AT2B3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q16720 Secondary accession number(s): B7WNR8, Q12995, Q16858 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


