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Q165E2

- GLGB_ROSDO

UniProt

Q165E2 - GLGB_ROSDO

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (25 Jul 2006)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei409 – 4091NucleophileUniRule annotation
    Active sitei462 – 4621Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciRDEN375451:GJIZ-2707-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:RD1_2875
    OrganismiRoseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
    Taxonomic identifieri375451 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
    ProteomesiUP000007029: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7317311,4-alpha-glucan branching enzyme GlgBPRO_0000260693Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi375451.RD1_2875.

    Structurei

    3D structure databases

    ProteinModelPortaliQ165E2.
    SMRiQ165E2. Positions 115-729.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiPIGVAYK.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 2 hits.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q165E2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNISQTDAEK LAAGCHGNPF SVLGLHEVAG KLSLRVFLPG AETVEALDPK    50
    TGRVIVTLNQ TETPGLFEGT AARRKKRFAY HLRITQGAHQ WQMDDPYRFG 100
    PVIGDIDEYL LGEGSHRRLW SVLGAHVITH EGVAGTHFAV WAPNAQRVSV 150
    VGEFNVWDGR RMMMRQRGAT GVWEIFVPGI GEGEIYKYEI IAPDGSLLPQ 200
    KADPVGFGAE HPPRTGSVVR KIDGYAWDDA QWMTRRADVQ RIDQPVSIYE 250
    VHLGSWRRVP EDGNRPLSYV ELADQLVAYV KDMGFTHMEV MPVSEFPFDG 300
    SWGYQPIGLF APTIRHGTLD EFRALVAACH RENIGVILDW VPGHFPEDAH 350
    GLGRFDGTAL YEHADRKEGF HPDWNTLVYN YGRAEVANYL AANALYWLQE 400
    HHVDGLRVDA VASMLYRDYS RKDGEWIPNR DGGRENYEAI SFLQKVNTES 450
    YGEVPGIMTI AEESTAFPGV SAPVDAGGLG FGFKWNMGWM NDTLQYMQQD 500
    PIHRKYHHHE MTFGLHYAFS ENFILPLSHD EVVHGKGSLL DKMPGQGDDK 550
    FANLRAYYGF MWGHPGKKLL FMGCEFAQGV EWNHDSSLDW HLLDHPQHRG 600
    MQNLVRDLNA LYRENAALHG LDCAAQGFEW IDENNAEASV LAWLRHGPDG 650
    GAPMLVVSNF TPVERSHYRL GVPQAGRWVE RLNTNADCYG GTGLGNLGGV 700
    QSADIAAAGR PFSIDVVLPP LTTLFFQLDD G 731
    Length:731
    Mass (Da):81,701
    Last modified:July 25, 2006 - v1
    Checksum:i59845556CC367F52
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000362 Genomic DNA. Translation: ABG32401.1.
    RefSeqiWP_011569017.1. NC_008209.1.
    YP_683087.1. NC_008209.1.

    Genome annotation databases

    EnsemblBacteriaiABG32401; ABG32401; RD1_2875.
    GeneIDi4196033.
    KEGGirde:RD1_2875.
    PATRICi23363741. VBIRosDen86677_2743.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000362 Genomic DNA. Translation: ABG32401.1 .
    RefSeqi WP_011569017.1. NC_008209.1.
    YP_683087.1. NC_008209.1.

    3D structure databases

    ProteinModelPortali Q165E2.
    SMRi Q165E2. Positions 115-729.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 375451.RD1_2875.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG32401 ; ABG32401 ; RD1_2875 .
    GeneIDi 4196033.
    KEGGi rde:RD1_2875.
    PATRICi 23363741. VBIRosDen86677_2743.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi PIGVAYK.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci RDEN375451:GJIZ-2707-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 2 hits.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33942 / OCh 114.

    Entry informationi

    Entry nameiGLGB_ROSDO
    AccessioniPrimary (citable) accession number: Q165E2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: July 25, 2006
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3