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Q165E2

- GLGB_ROSDO

UniProt

Q165E2 - GLGB_ROSDO

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei409 – 4091NucleophileUniRule annotation
Active sitei462 – 4621Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciRDEN375451:GJIZ-2707-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:RD1_2875
OrganismiRoseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
Taxonomic identifieri375451 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
ProteomesiUP000007029: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7317311,4-alpha-glucan branching enzyme GlgBPRO_0000260693Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi375451.RD1_2875.

Structurei

3D structure databases

ProteinModelPortaliQ165E2.
SMRiQ165E2. Positions 115-729.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiPIGVAYK.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 2 hits.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q165E2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNISQTDAEK LAAGCHGNPF SVLGLHEVAG KLSLRVFLPG AETVEALDPK
60 70 80 90 100
TGRVIVTLNQ TETPGLFEGT AARRKKRFAY HLRITQGAHQ WQMDDPYRFG
110 120 130 140 150
PVIGDIDEYL LGEGSHRRLW SVLGAHVITH EGVAGTHFAV WAPNAQRVSV
160 170 180 190 200
VGEFNVWDGR RMMMRQRGAT GVWEIFVPGI GEGEIYKYEI IAPDGSLLPQ
210 220 230 240 250
KADPVGFGAE HPPRTGSVVR KIDGYAWDDA QWMTRRADVQ RIDQPVSIYE
260 270 280 290 300
VHLGSWRRVP EDGNRPLSYV ELADQLVAYV KDMGFTHMEV MPVSEFPFDG
310 320 330 340 350
SWGYQPIGLF APTIRHGTLD EFRALVAACH RENIGVILDW VPGHFPEDAH
360 370 380 390 400
GLGRFDGTAL YEHADRKEGF HPDWNTLVYN YGRAEVANYL AANALYWLQE
410 420 430 440 450
HHVDGLRVDA VASMLYRDYS RKDGEWIPNR DGGRENYEAI SFLQKVNTES
460 470 480 490 500
YGEVPGIMTI AEESTAFPGV SAPVDAGGLG FGFKWNMGWM NDTLQYMQQD
510 520 530 540 550
PIHRKYHHHE MTFGLHYAFS ENFILPLSHD EVVHGKGSLL DKMPGQGDDK
560 570 580 590 600
FANLRAYYGF MWGHPGKKLL FMGCEFAQGV EWNHDSSLDW HLLDHPQHRG
610 620 630 640 650
MQNLVRDLNA LYRENAALHG LDCAAQGFEW IDENNAEASV LAWLRHGPDG
660 670 680 690 700
GAPMLVVSNF TPVERSHYRL GVPQAGRWVE RLNTNADCYG GTGLGNLGGV
710 720 730
QSADIAAAGR PFSIDVVLPP LTTLFFQLDD G
Length:731
Mass (Da):81,701
Last modified:July 25, 2006 - v1
Checksum:i59845556CC367F52
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000362 Genomic DNA. Translation: ABG32401.1.
RefSeqiYP_683087.1. NC_008209.1.

Genome annotation databases

EnsemblBacteriaiABG32401; ABG32401; RD1_2875.
GeneIDi4196033.
KEGGirde:RD1_2875.
PATRICi23363741. VBIRosDen86677_2743.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000362 Genomic DNA. Translation: ABG32401.1 .
RefSeqi YP_683087.1. NC_008209.1.

3D structure databases

ProteinModelPortali Q165E2.
SMRi Q165E2. Positions 115-729.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 375451.RD1_2875.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABG32401 ; ABG32401 ; RD1_2875 .
GeneIDi 4196033.
KEGGi rde:RD1_2875.
PATRICi 23363741. VBIRosDen86677_2743.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi PIGVAYK.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci RDEN375451:GJIZ-2707-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 2 hits.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33942 / OCh 114.

Entry informationi

Entry nameiGLGB_ROSDO
AccessioniPrimary (citable) accession number: Q165E2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 25, 2006
Last modified: October 29, 2014
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3