Q16587 (ZNF74_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 123.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger protein 74 Alternative name(s): Zinc finger protein 520 hZNF7 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 644 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | May play a role in RNA metabolism. |
| Subcellular location | |
| Tissue specificity | Highly expressed in the fetal brain. |
| Sequence similarities | Belongs to the krueppel C2H2-type zinc-finger protein family. Contains 12 C2H2-type zinc fingers. Contains 1 KRAB domain. |
| Sequence caution | The sequence AAF21777.1 differs from that shown. Reason: Frameshift at positions 164 and 173. The sequence AAF21778.1 differs from that shown. Reason: Frameshift at positions 164 and 173. The sequence AAF21779.1 differs from that shown. Reason: Frameshift at positions 164 and 173. The sequence AAF21780.1 differs from that shown. Reason: Frameshift at positions 164 and 173. The sequence CAA50632.1 differs from that shown. Reason: Frameshift at positions 164 and 173. The sequence CAA63379.1 differs from that shown. Reason: Frameshift at positions 164 and 173. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat Zinc-finger |
| Ligand | DNA-binding Metal-binding RNA-binding Zinc |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | multicellular organismal development Traceable author statement Ref.8. Source: ProtInc regulation of transcription, DNA-dependentTraceable author statement Ref.8. Source: ProtInc transcription, DNA-dependentInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | actin cytoskeleton Inferred from direct assay. Source: HPA nucleusInferred from direct assay. Source: HPA |
| Molecular_function | DNA binding Inferred from electronic annotation. Source: UniProtKB-KW RNA bindingInferred from electronic annotation. Source: UniProtKB-KW zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 2 (identifier: Q16587-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 1 (identifier: Q16587-2) The sequence of this isoform differs from the canonical sequence as follows: 1-71: Missing. | ||||||
| Isoform 3 (identifier: Q16587-3) The sequence of this isoform differs from the canonical sequence as follows: 83-114: Missing. | ||||||
| Isoform 4 (identifier: Q16587-4) The sequence of this isoform differs from the canonical sequence as follows: 1-82: MEIPAPEPEK...LENYQNLLAL → MPSPPFSPRA | ||||||
| Isoform 5 (identifier: Q16587-5) The sequence of this isoform differs from the canonical sequence as follows: 12-178: ALSSQDPALS...AMVWDVPVEE → GIGEFQGCGC...AGHTQERPGH 179-644: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 644 | 644 | Zinc finger protein 74 | PRO_0000047383 | |||||
Regions | |||||||||
| Domain | 43 – 114 | 72 | KRAB | ||||||
| Zinc finger | 248 – 270 | 23 | C2H2-type 1 | ||||||
| Zinc finger | 276 – 298 | 23 | C2H2-type 2 | ||||||
| Zinc finger | 304 – 326 | 23 | C2H2-type 3 | ||||||
| Zinc finger | 332 – 354 | 23 | C2H2-type 4 | ||||||
| Zinc finger | 360 – 382 | 23 | C2H2-type 5 | ||||||
| Zinc finger | 388 – 410 | 23 | C2H2-type 6 | ||||||
| Zinc finger | 416 – 438 | 23 | C2H2-type 7 | ||||||
| Zinc finger | 444 – 466 | 23 | C2H2-type 8 | ||||||
| Zinc finger | 472 – 494 | 23 | C2H2-type 9 | ||||||
| Zinc finger | 500 – 522 | 23 | C2H2-type 10 | ||||||
| Zinc finger | 528 – 550 | 23 | C2H2-type 11 | ||||||
| Zinc finger | 556 – 578 | 23 | C2H2-type 12 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 82 | 82 | MEIPA…NLLAL → MPSPPFSPRA in isoform 4. | VSP_006893 | |||||
| Alternative sequence | 1 – 71 | 71 | Missing in isoform 1. | VSP_006891 | |||||
| Alternative sequence | 12 – 178 | 167 | ALSSQ…VPVEE → GIGEFQGCGCGLHPGGVGST RLPSEGLVPGCDVGELPEPS CPRTSTAQARCDLSSGTRRG AMEHAEGSPQRALSRMGAEG GALSTAGHLQRRTGPGAHHG AAPRRGAGVGAPGRCSAEES GCALGARTCHGLGRPCRGIP PQVSPLRPATRSRGGTLAGH TQERPGH in isoform 5. | VSP_045530 | |||||
| Alternative sequence | 83 – 114 | 32 | Missing in isoform 3. | VSP_006892 | |||||
| Alternative sequence | 179 – 644 | 466 | Missing in isoform 5. | VSP_045531 | |||||
| Natural variant | 117 | 1 | E → K. Ref.5 Ref.9 Corresponds to variant rs3747076 [ dbSNP | Ensembl ]. | VAR_012993 | |||||
| Natural variant | 623 – 624 | 2 | KL → NF. | VAR_012994 | |||||
Experimental info | |||||||||
| Sequence conflict | 171 | 1 | V → A in AAH13395. Ref.7 | ||||||
| Sequence conflict | 517 | 1 | V → M in CAA63379. Ref.1 | ||||||
| Sequence conflict | 517 | 1 | V → M in CAA50632. Ref.2 | ||||||
| Sequence conflict | 517 | 1 | V → M in AAF21777. Ref.4 | ||||||
| Sequence conflict | 517 | 1 | V → M in AAF21778. Ref.4 | ||||||
| Sequence conflict | 517 | 1 | V → M in AAF21779. Ref.4 | ||||||
| Sequence conflict | 517 | 1 | V → M in AAF21780. Ref.4 | ||||||
| Sequence conflict | 569 | 1 | S → P in BAH13068. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The KRAB zinc finger gene ZNF74 encodes an RNA-binding protein tightly associated with the nuclear matrix." Grondin B., Bazinet M., Aubry M. J. Biol. Chem. 271:15458-15467(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Brain. |
| [2] | "Isolation of a zinc finger gene consistently deleted in DiGeorge syndrome." Aubry M., Demczuk S., Desmaze C., Aikem M., Aurias M., Julien J.-P., Rouleau G.A. Hum. Mol. Genet. 2:1583-1587(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Brain. |
| [3] | "A genome annotation-driven approach to cloning the human ORFeome." Collins J.E., Wright C.L., Edwards C.A., Davis M.P., Grinham J.A., Cole C.G., Goward M.E., Aguado B., Mallya M., Mokrab Y., Huckle E.J., Beare D.M., Dunham I. Genome Biol. 5:R84.1-R84.11(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). |
| [4] | "Alternative promoter usage and splicing of ZNF74 gene." Aubry M., Cote F. Submitted (JUN-1998) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], ALTERNATIVE SPLICING. |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT LYS-117. Tissue: Brain. |
| [6] | "The DNA sequence of human chromosome 22." Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M. Wright H.Nature 402:489-495(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 5). Tissue: Muscle and Retinoblastoma. |
| [8] | "Cloning of six new genes with zinc finger motifs mapping to short and long arms of human acrocentric chromosome 22 (p and q11.2)." Aubry M., Marineau C., Zhang F.R., Zahed L., Figlewicz D., Delattre O., Thomas G., de Jong P.J., Julien J.-P., Rouleau G.A. Genomics 13:641-648(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 499-583. |
| [9] | "Association of ZNF74 gene genotypes with age-at-onset of schizophrenia." Takase K., Ohtsuki T., Migita O., Toru M., Inada T., Yamakawa-Kobayashi K., Arinami T. Schizophr. Res. 52:161-165(2001) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS LYS-117 AND 623-ASN-PHE-624. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X92715 mRNA. Translation: CAA63379.1. Frameshift. X71623 mRNA. Translation: CAA50632.1. Frameshift. CR456616 mRNA. Translation: CAG30502.1. AF072567, AF072557, AF072562 Genomic DNA. Translation: AAF21777.1. Frameshift. AF072567, AF072557, AF072562 Genomic DNA. Translation: AAF21778.1. Frameshift. AF072567, AF072562 Genomic DNA. Translation: AAF21779.1. Frameshift. AF072567, AF072562 Genomic DNA. Translation: AAF21780.1. Frameshift. AK299569 mRNA. Translation: BAH13068.1. AC007731 Genomic DNA. No translation available. BC013395 mRNA. Translation: AAH13395.1. BC056902 mRNA. No translation available. X63182 Genomic DNA. Translation: CAC16149.1. |
| IPI | IPI00220139. IPI00220140. IPI00480138. IPI00807386. IPI00892733. |
| PIR | I39311. |
| RefSeq | NP_001243452.1. NM_001256523.1. NP_001243453.1. NM_001256524.1. NP_001243454.1. NM_001256525.1. NP_003417.2. NM_003426.3. |
| UniGene | Hs.517418. |
3D structure databases | |
| ProteinModelPortal | Q16587. |
| SMR | Q16587. Positions 43-83, 245-578. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q16587. 1 interaction. |
| STRING | 9606.ENSP00000383301. |
PTM databases | |
| PhosphoSite | Q16587. |
Polymorphism databases | |
| DMDM | 292495055. |
Proteomic databases | |
| PaxDb | Q16587. |
| PRIDE | Q16587. |
Protocols and materials databases | |
| DNASU | 7625. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000356671; ENSP00000349098; ENSG00000185252. ENST00000400451; ENSP00000383301; ENSG00000185252. ENST00000403682; ENSP00000384750; ENSG00000185252. ENST00000405993; ENSP00000385855; ENSG00000185252. |
| GeneID | 7625. |
| KEGG | hsa:7625. |
| UCSC | uc002zsg.3. human. |
Organism-specific databases | |
| CTD | 7625. |
| GeneCards | GC22P020748. |
| HGNC | HGNC:13144. ZNF74. |
| HPA | HPA003354. |
| MIM | 194548. gene. |
| neXtProt | NX_Q16587. |
| PharmGKB | PA37718. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG5048. |
| HOVERGEN | HBG018163. |
| InParanoid | Q16587. |
| OMA | VAKLLCV. |
| OrthoDB | EOG4GMTWN. |
Enzyme and pathway databases | |
| Reactome | REACT_71. Gene Expression. |
Gene expression databases | |
| ArrayExpress | Q16587. |
| Bgee | Q16587. |
| CleanEx | HS_ZNF74. |
| Genevestigator | Q16587. |
| GermOnline | ENSG00000185252. Homo sapiens. |
Family and domain databases | |
| Gene3D | 3.30.160.60. 12 hits. |
| InterPro | IPR001909. Krueppel-associated_box. IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view] |
| Pfam | PF01352. KRAB. 1 hit. [Graphical view] |
| SMART | SM00349. KRAB. 1 hit. SM00355. ZnF_C2H2. 12 hits. [Graphical view] |
| SUPFAM | SSF109640. Krueppel-associated_box. 1 hit. |
| PROSITE | PS50805. KRAB. 1 hit. PS00028. ZINC_FINGER_C2H2_1. 12 hits. PS50157. ZINC_FINGER_C2H2_2. 12 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 7625. |
| NextBio | 29717. |
| SOURCE | Search... |
Entry information
| Entry name | ZNF74_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q16587 Secondary accession number(s): B5MCE3 Q9UF07 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 22 Human chromosome 22: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
