Q163F0 (Q163F0_ROSDO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Octaprenyl-diphosphate synthase EMBL ABG32893.1

Gene names

Name:	ispB EMBL ABG32893.1
Ordered Locus Names:	RD1_3401 EMBL ABG32893.1

Organism

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) [Complete proteome] [HAMAP] EMBL ABG32893.1

Taxonomic identifier

375451 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Roseobacter › Roseobacter denitrificans

Protein attributes

Sequence length	333 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the FPP/GGPP synthase family. RuleBase RU004466

Ontologies

Keywords
Biological process	Isoprene biosynthesis RuleBase RU004466
Molecular function	Transferase RuleBase RU004466
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	isoprenoid biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	transferase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q163F0 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: D798567AD9B77A06	FASTA	333	35,991
	10 20 30 40 50 60 MSKTENAQKP HDRMAAYLES DMAAVSTLIR ERMASKHAPR IPEVTAHLVE AGGKRLRPML 70 80 90 100 110 120 TLAAAHLCGY DGPFHINLAA TVEFIHTATL LHDDVVDESG QRRGRPTANL LWDNKSSVLV 130 140 150 160 170 180 GDYLFSRSFQ LMVETGSLRV LDILANASAT IAEGEVLQLT ASQNLATTEE VYLQVVRGKT 190 200 210 220 230 240 AALFSAATEV GGVIAGAPDD HVAALFEYGD ALGIAFQIVD DLLDFQGDAG AIGKNIGDDF 250 260 270 280 290 300 RERKLTMPLI KAVAKADAEE RAFWVRTIEK GKQEEGDLQH AIALLHKHAA LTDTSVVART 310 320 330 QAARAKAALA PLPAHPVKDM LVDLADYVVE RIN

References

[1]

"The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism." Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H., Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K., O'huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T., Touchman J.W. J. Bacteriol. 189:683-690(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33942 / OCh 114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000362 Genomic DNA. Translation: ABG32893.1.
RefSeq	YP_683579.1. NC_008209.1.
3D structure databases
ProteinModelPortal	Q163F0.
ModBase	Search...
Protein-protein interaction databases
STRING	375451.RD1_3401.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG32893; ABG32893; RD1_3401.
GeneID	4196105.
KEGG	rde:RD1_3401.
PATRIC	23364755. VBIRosDen86677_3246.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0142.
HOGENOM	HOG000009102.
KO	K02523.
OMA	NDIRIIT.
ProtClustDB	CLSK933222.
Enzyme and pathway databases
BioCyc	RDEN375451:GJIZ-3205-MONOMER.
Family and domain databases
Gene3D	1.10.600.10. 1 hit.
InterPro	IPR000092. Polyprenyl_synt. IPR017446. Polyprenyl_synth-rel. IPR008949. Terpenoid_synth. [Graphical view]
PANTHER	PTHR12001. PTHR12001. 1 hit.
Pfam	PF00348. polyprenyl_synt. 1 hit. [Graphical view]
SUPFAM	SSF48576. Terpenoid_synth. 1 hit.
PROSITE	PS00723. POLYPRENYL_SYNTHASE_1. 1 hit. PS00444. POLYPRENYL_SYNTHASE_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q163F0_ROSDO

Accession

Primary (citable) accession number: Q163F0

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)