Q163A7 (Q163A7_ROSDO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-binding protein, putative EMBL ABG32936.1

Gene names

Ordered Locus Names:

RD1_3446 EMBL ABG32936.1

Organism

Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) [Complete proteome] [HAMAP] EMBL ABG32936.1

Taxonomic identifier

375451 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Roseobacter › Roseobacter denitrificans

Protein attributes

Sequence length	356 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Ligand	DNA-binding EMBL ABG32936.1
Technical term	Complete proteome
Gene Ontology (GO)
Molecular_function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q163A7 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: 0350E57CA45ABDE3	FASTA	356	40,140
	10 20 30 40 50 60 MFNSDRLKTA RERRMLTAKG LAERVGVSAV TLSKYENGHA PDEATAKRLA MALSYPLDFF 70 80 90 100 110 120 FREAPERIDT DAVSFRSLAR MKAKERRAAE AAGSLGIELY EWIDARFNLP SADLIDLSKE 130 140 150 160 170 180 RRRPFVAARL LRQHWGLGDR PIGNVLKLIE SKGIRVLSLS EATKNVDAYS FWRGEHPYVF 190 200 210 220 230 240 LNQEKTAERS IFDTAHELGH LVLHHHADSK TDKEAETQAD RFASAFLMPE SDVMDYAHLF 250 260 270 280 290 300 TAGQIIAAKK RWKVSAMALA NRLNSLGYIS EWNYRSLLIE LGKRGYRSGE PDGIEREVST 310 320 330 340 350 VLAKVLAALW SKGMTKENIA RDLGIPLEEI EALIFRLSPD QGASLEVRKP SLRVVK

References

[1]

"The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism." Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H., Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K., O'huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T., Touchman J.W. J. Bacteriol. 189:683-690(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 33942 / OCh 114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000362 Genomic DNA. Translation: ABG32936.1.
RefSeq	YP_683622.1. NC_008209.1.
3D structure databases
ProteinModelPortal	Q163A7.
ModBase	Search...
Protein-protein interaction databases
STRING	375451.RD1_3446.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG32936; ABG32936; RD1_3446.
GeneID	4198862.
KEGG	rde:RD1_3446.
PATRIC	23364847. VBIRosDen86677_3291.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2856.
HOGENOM	HOG000006406.
OMA	WNVSAMA.
ProtClustDB	CLSK953866.
Enzyme and pathway databases
BioCyc	RDEN375451:GJIZ-3249-MONOMER.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010359. DUF955. IPR001387. HTH. IPR010982. Lambda_DNA-bd_dom. [Graphical view]
Pfam	PF06114. DUF955. 1 hit. PF01381. HTH_3. 1 hit. [Graphical view]
SMART	SM00530. HTH_XRE. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS50943. HTH_CROC1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q163A7_ROSDO

Accession

Primary (citable) accession number: Q163A7

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	May 1, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)