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Protein
Submitted name:

Chemotaxis protein, putative

Gene

RD1_3530

Organism
Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciRDEN375451:GJIZ-3316-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Chemotaxis protein, putativeImported
Gene namesi
Ordered Locus Names:RD1_3530Imported
OrganismiRoseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)Imported
Taxonomic identifieri375451 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
Proteomesi
  • UP000007029 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 27HelicalSequence analysisAdd BLAST22
Transmembranei324 – 347HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi375451.RD1_3530.

Structurei

3D structure databases

ProteinModelPortaliQ162T1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini494 – 546HAMPInterPro annotationAdd BLAST53
Domaini551 – 780Methyl-accepting transducerInterPro annotationAdd BLAST230

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili403 – 453Sequence analysisAdd BLAST51

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105V7P. Bacteria.
COG0840. LUCA.
KOiK05874.
OMAiDEASHNI.
OrthoDBiPOG091H0QRR.

Family and domain databases

InterProiIPR003660. HAMP_dom.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTiSM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q162T1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLSVFILVG FGIIGTMLLA LGGTVALKSV RELQDVRSAA VFVDTETTAM
60 70 80 90 100
SATVAMSLER SVTQVALAFE EPIPANFRDL IDQQRALADA GLKAAIEIAE
110 120 130 140 150
SAAHLPVKNT FINQTRESLA RVNAMRREID SLLRVSRSER DAKRSYELPF
160 170 180 190 200
ELKTEVIALK NATQLLRNRV SVSSKVAGAL QAAQLGAWEV REFGGRARTY
210 220 230 240 250
FAIATLNNEA IGEVDAGQLR LDQSRARGAW NALRNKTLGV SGLPESIVND
260 270 280 290 300
ISAAEQLYFS EYQSILADLK TESEAALDGA PVNYSISFAD FFERSNAALG
310 320 330 340 350
AMENLSQDSG EALNAYWTGR ERSAWMMAIG SIAVAFTTFT VLCVIYFQIR
360 370 380 390 400
ARVGGLLGAT SRILKAMAQG DLDIRVRENR KELEEIKDLH KAVMAFREKM
410 420 430 440 450
LQARQAEADA AAQQRALEIQ SAQQEKDQIE QQAALAEKEK ADAQKRYAKE
460 470 480 490 500
RKAAEDIAKV VEACAAGDFS QRLNIEDKEG VFAEICDGMN RIGQAADLGL
510 520 530 540 550
GAVRHALDQL AEGNLSHRMP EDFEGIFAEI AVAMNNTTNS LSKTISDISG
560 570 580 590 600
SSNLLDEASH NIAEASKDLS RRSQKNASSL AQSAEDLAQM TNSVSTAADA
610 620 630 640 650
AKTAGSAVKS VEEMAASGNQ IVTQTIDAMN EIKSSSDEIA KVLKLIDDIA
660 670 680 690 700
FQTNLLALNA GVEAARAGEQ GRGFAVVATE VRELAMRSSR AAQEIADLTN
710 720 730 740 750
VSADQVNRGV DLVNASGEAL SGIVSAVADA SSKLEDIVIA TTETSTGIRT
760 770 780 790 800
ISKATSDLDA DTKNNSVVFA ETETAVQSLR SVSVDLTKSV AAFRLQPGAA
810
LSDGASKVMR KTA
Length:813
Mass (Da):87,135
Last modified:July 25, 2006 - v1
Checksum:i67F9D1F6778A8BC5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000362 Genomic DNA. Translation: ABG33012.1.

Genome annotation databases

EnsemblBacteriaiABG33012; ABG33012; RD1_3530.
KEGGirde:RD1_3530.
PATRICi23365019. VBIRosDen86677_3376.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000362 Genomic DNA. Translation: ABG33012.1.

3D structure databases

ProteinModelPortaliQ162T1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi375451.RD1_3530.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG33012; ABG33012; RD1_3530.
KEGGirde:RD1_3530.
PATRICi23365019. VBIRosDen86677_3376.

Phylogenomic databases

eggNOGiENOG4105V7P. Bacteria.
COG0840. LUCA.
KOiK05874.
OMAiDEASHNI.
OrthoDBiPOG091H0QRR.

Enzyme and pathway databases

BioCyciRDEN375451:GJIZ-3316-MONOMER.

Family and domain databases

InterProiIPR003660. HAMP_dom.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTiSM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ162T1_ROSDO
AccessioniPrimary (citable) accession number: Q162T1
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: November 2, 2016
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.