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Q162B6 (XYLA_ROSDO) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length433 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. HAMAP-Rule MF_00455

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00455

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00455.

Sequence similarities

Belongs to the xylose isomerase family.

Ontologies

Keywords
   Biological processCarbohydrate metabolism
Pentose shunt
Xylose metabolism
   Cellular componentCytoplasm
   LigandMagnesium
Metal-binding
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-xylose metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

pentose-phosphate shunt

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

xylose isomerase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 433433Xylose isomerase HAMAP-Rule MF_00455
PRO_1000026454

Sites

Active site991 By similarity
Active site1021 By similarity
Metal binding2301Magnesium 1 By similarity
Metal binding2661Magnesium 1 By similarity
Metal binding2661Magnesium 2 By similarity
Metal binding2691Magnesium 2 By similarity
Metal binding2941Magnesium 1 By similarity
Metal binding3051Magnesium 2 By similarity
Metal binding3071Magnesium 2 By similarity
Metal binding3371Magnesium 1 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q162B6 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 6E9465CDEF79142E

FASTA43348,309
        10         20         30         40         50         60 
MTDFFKDIPA IRYEGPDTEN EFAFRHYNPD EVVMGKTLKD HLRFACAYWH SFAWPGGDPF 

        70         80         90        100        110        120 
GGQTFERPWF GDTMELAKLK ADVAFDMFER LGVPYFCFHD ADVRPEGDTF AESTKNLEEI 

       130        140        150        160        170        180 
TDYFAEKMDA TGVKLLWGTA NLFSHRRFMA GAATNPDPEV FAYSAATIKS CMDATRKLGG 

       190        200        210        220        230        240 
ENYVLWGGRE GYETLLNTDM ARERAQAGRM LQMVVDYKHK TGFAGTILIE PKPQEPTKHQ 

       250        260        270        280        290        300 
YDYDVATVYG FLKDFGLEGE VKVNIEQGHA ILAGHSFEHE LALARALGIF GSIDMNRNDY 

       310        320        330        340        350        360 
QSGWDTDQFP NNVPEMALAY YEVLRAGGFD TGGTNFDAKL RRQSLDPADL ILAHVGGMDA 

       370        380        390        400        410        420 
CAAGLKAAAA MLEDGKLEAA REARYAGWSE GLGQKLLTSD LAEISDLVIA KGINPQPRSG 

       430 
RQERLENLVN KYL 

« Hide

References

[1]"The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism."
Swingley W.D., Sadekar S., Mastrian S.D., Matthies H.J., Hao J., Ramos H., Acharya C.R., Conrad A.L., Taylor H.L., Dejesa L.C., Shah M.K., O'Huallachain M.E., Lince M.T., Blankenship R.E., Beatty J.T., Touchman J.W.
J. Bacteriol. 189:683-690(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 33942 / OCh 114.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000362 Genomic DNA. Translation: ABG33177.1.
RefSeqYP_683863.1. NC_008209.1.

3D structure databases

ProteinModelPortalQ162B6.
SMRQ162B6. Positions 2-433.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING375451.RD1_3705.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG33177; ABG33177; RD1_3705.
GeneID4196123.
KEGGrde:RD1_3705.
PATRIC23365361. VBIRosDen86677_3546.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2115.
HOGENOMHOG000252293.
KOK01805.
OMAKADSAFE.
OrthoDBEOG62NX4R.

Enzyme and pathway databases

BioCycRDEN375451:GJIZ-3493-MONOMER.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameXYLA_ROSDO
AccessionPrimary (citable) accession number: Q162B6
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 25, 2006
Last modified: May 14, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families