Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q162B6

- XYLA_ROSDO

UniProt

Q162B6 - XYLA_ROSDO

Protein

Xylose isomerase

Gene

xylA

Organism
Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (25 Jul 2006)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei99 – 991UniRule annotation
    Active sitei102 – 1021UniRule annotation
    Metal bindingi230 – 2301Magnesium 1UniRule annotation
    Metal bindingi266 – 2661Magnesium 1UniRule annotation
    Metal bindingi266 – 2661Magnesium 2UniRule annotation
    Metal bindingi269 – 2691Magnesium 2UniRule annotation
    Metal bindingi294 – 2941Magnesium 1UniRule annotation
    Metal bindingi305 – 3051Magnesium 2UniRule annotation
    Metal bindingi307 – 3071Magnesium 2UniRule annotation
    Metal bindingi337 – 3371Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shunt, Xylose metabolism

    Keywords - Ligandi

    Magnesium, Metal-binding

    Enzyme and pathway databases

    BioCyciRDEN375451:GJIZ-3493-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotation
    Ordered Locus Names:RD1_3705
    OrganismiRoseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
    Taxonomic identifieri375451 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseobacter
    ProteomesiUP000007029: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 433433Xylose isomerasePRO_1000026454Add
    BLAST

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Protein-protein interaction databases

    STRINGi375451.RD1_3705.

    Structurei

    3D structure databases

    ProteinModelPortaliQ162B6.
    SMRiQ162B6. Positions 2-433.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    HOGENOMiHOG000252293.
    KOiK01805.
    OMAiKADSAFE.
    OrthoDBiEOG62NX4R.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q162B6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTDFFKDIPA IRYEGPDTEN EFAFRHYNPD EVVMGKTLKD HLRFACAYWH    50
    SFAWPGGDPF GGQTFERPWF GDTMELAKLK ADVAFDMFER LGVPYFCFHD 100
    ADVRPEGDTF AESTKNLEEI TDYFAEKMDA TGVKLLWGTA NLFSHRRFMA 150
    GAATNPDPEV FAYSAATIKS CMDATRKLGG ENYVLWGGRE GYETLLNTDM 200
    ARERAQAGRM LQMVVDYKHK TGFAGTILIE PKPQEPTKHQ YDYDVATVYG 250
    FLKDFGLEGE VKVNIEQGHA ILAGHSFEHE LALARALGIF GSIDMNRNDY 300
    QSGWDTDQFP NNVPEMALAY YEVLRAGGFD TGGTNFDAKL RRQSLDPADL 350
    ILAHVGGMDA CAAGLKAAAA MLEDGKLEAA REARYAGWSE GLGQKLLTSD 400
    LAEISDLVIA KGINPQPRSG RQERLENLVN KYL 433
    Length:433
    Mass (Da):48,309
    Last modified:July 25, 2006 - v1
    Checksum:i6E9465CDEF79142E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000362 Genomic DNA. Translation: ABG33177.1.
    RefSeqiWP_011569788.1. NC_008209.1.
    YP_683863.1. NC_008209.1.

    Genome annotation databases

    EnsemblBacteriaiABG33177; ABG33177; RD1_3705.
    GeneIDi4196123.
    KEGGirde:RD1_3705.
    PATRICi23365361. VBIRosDen86677_3546.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000362 Genomic DNA. Translation: ABG33177.1 .
    RefSeqi WP_011569788.1. NC_008209.1.
    YP_683863.1. NC_008209.1.

    3D structure databases

    ProteinModelPortali Q162B6.
    SMRi Q162B6. Positions 2-433.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 375451.RD1_3705.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG33177 ; ABG33177 ; RD1_3705 .
    GeneIDi 4196123.
    KEGGi rde:RD1_3705.
    PATRICi 23365361. VBIRosDen86677_3546.

    Phylogenomic databases

    eggNOGi COG2115.
    HOGENOMi HOG000252293.
    KOi K01805.
    OMAi KADSAFE.
    OrthoDBi EOG62NX4R.

    Enzyme and pathway databases

    BioCyci RDEN375451:GJIZ-3493-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 33942 / OCh 114.

    Entry informationi

    Entry nameiXYLA_ROSDO
    AccessioniPrimary (citable) accession number: Q162B6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 15, 2008
    Last sequence update: July 25, 2006
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3