Q15ZT3 (Q15ZT3_PSEA6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABG38605.1

Gene names

Ordered Locus Names:

Patl_0073

Organism

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG38605.1

Taxonomic identifier

342610 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas › Alteromonas atlantica

Protein attributes

Sequence length	279 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABG38605.1
Molecular function	Ligase EMBL ABG38605.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 23	23	Potential EMBL ABG38605.1
	Chain	24 – 279	256	Potential EMBL ABG38605.1		PRO_5000124972

Sequences

	Sequence		Length	Mass (Da)
	Q15ZT3 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: 87B01FED0877C12E	FASTA	279	31,443
	10 20 30 40 50 60 MSVFTPPILI FLISIHSSTV LALTKPEIEL ANRFNDAVNV SDYLVSEKLD GIRARWDGSR 70 80 90 100 110 120 LLTRTGNPIF APQWFTNGLP KHIFDGELWI ARQRFEKTAS VVLTHEPGDD WREVKFMLFD 130 140 150 160 170 180 LPEFTGAFSE RLRMLEVLVQ QANLPHLQVI PQQKLHSKSA LMQLLDQVID GGGEGLMLHH 190 200 210 220 230 240 EDALYTPSRS DNVLKLKKHQ DAEAIVLAHL PGNGKYQGMM GSIRVQMSNG KVFKIGSGFS 250 260 270 DQERLSPPPI GAVITFKYYD LTINGIPKFA SYIRQKPSY

References

[1]

"Complete sequence of Pseudoalteromonas atlantica T6c." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000388 Genomic DNA. Translation: ABG38605.1.
RefSeq	YP_659659.1. NC_008228.1.
3D structure databases
ProteinModelPortal	Q15ZT3.
ModBase	Search...
Protein-protein interaction databases
STRING	342610.Patl_0073.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG38605; ABG38605; Patl_0073.
GeneID	4171773.
KEGG	pat:Patl_0073.
PATRIC	23044928. VBIPseAtl25434_0076.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Enzyme and pathway databases
BioCyc	PATL342610:GHGT-78-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q15ZT3_PSEA6

Accession

Primary (citable) accession number: Q15ZT3

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	May 29, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)