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Q15ZT3 (Q15ZT3_PSEA6) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Patl_0073 EMBL ABG38605.1
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG38605.1
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length279 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABG38605.1
   Molecular functionLigase EMBL ABG38605.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential EMBL ABG38605.1
Chain24 – 279256 Potential EMBL ABG38605.1
PRO_5000124972

Sequences

Sequence LengthMass (Da)Tools
Q15ZT3 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 87B01FED0877C12E

FASTA27931,443
        10         20         30         40         50         60 
MSVFTPPILI FLISIHSSTV LALTKPEIEL ANRFNDAVNV SDYLVSEKLD GIRARWDGSR 

        70         80         90        100        110        120 
LLTRTGNPIF APQWFTNGLP KHIFDGELWI ARQRFEKTAS VVLTHEPGDD WREVKFMLFD 

       130        140        150        160        170        180 
LPEFTGAFSE RLRMLEVLVQ QANLPHLQVI PQQKLHSKSA LMQLLDQVID GGGEGLMLHH 

       190        200        210        220        230        240 
EDALYTPSRS DNVLKLKKHQ DAEAIVLAHL PGNGKYQGMM GSIRVQMSNG KVFKIGSGFS 

       250        260        270 
DQERLSPPPI GAVITFKYYD LTINGIPKFA SYIRQKPSY 

« Hide

References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000388 Genomic DNA. Translation: ABG38605.1.
RefSeqYP_659659.1. NC_008228.1.

3D structure databases

ProteinModelPortalQ15ZT3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING342610.Patl_0073.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG38605; ABG38605; Patl_0073.
GeneID4171773.
KEGGpat:Patl_0073.
PATRIC23044928. VBIPseAtl25434_0076.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycPATL342610:GHGT-78-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ15ZT3_PSEA6
AccessionPrimary (citable) accession number: Q15ZT3
Entry history
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: June 11, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)