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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Patl_0073

Organism
Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPATL342610:GHGT-78-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Patl_0073Imported
OrganismiPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)Imported
Taxonomic identifieri342610 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas
ProteomesiUP000001981 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323 PotentialImportedAdd
BLAST
Chaini24 – 279256 PotentialImportedPRO_5000124972Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi342610.Patl_0073.

Structurei

3D structure databases

ProteinModelPortaliQ15ZT3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q15ZT3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVFTPPILI FLISIHSSTV LALTKPEIEL ANRFNDAVNV SDYLVSEKLD
60 70 80 90 100
GIRARWDGSR LLTRTGNPIF APQWFTNGLP KHIFDGELWI ARQRFEKTAS
110 120 130 140 150
VVLTHEPGDD WREVKFMLFD LPEFTGAFSE RLRMLEVLVQ QANLPHLQVI
160 170 180 190 200
PQQKLHSKSA LMQLLDQVID GGGEGLMLHH EDALYTPSRS DNVLKLKKHQ
210 220 230 240 250
DAEAIVLAHL PGNGKYQGMM GSIRVQMSNG KVFKIGSGFS DQERLSPPPI
260 270
GAVITFKYYD LTINGIPKFA SYIRQKPSY
Length:279
Mass (Da):31,443
Last modified:July 25, 2006 - v1
Checksum:i87B01FED0877C12E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000388 Genomic DNA. Translation: ABG38605.1.
RefSeqiWP_011573015.1. NC_008228.1.

Genome annotation databases

EnsemblBacteriaiABG38605; ABG38605; Patl_0073.
KEGGipat:Patl_0073.
PATRICi23044928. VBIPseAtl25434_0076.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000388 Genomic DNA. Translation: ABG38605.1.
RefSeqiWP_011573015.1. NC_008228.1.

3D structure databases

ProteinModelPortaliQ15ZT3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi342610.Patl_0073.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG38605; ABG38605; Patl_0073.
KEGGipat:Patl_0073.
PATRICi23044928. VBIPseAtl25434_0076.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciPATL342610:GHGT-78-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: T6c / ATCC BAA-1087Imported.

Entry informationi

Entry nameiQ15ZT3_PSEA6
AccessioniPrimary (citable) accession number: Q15ZT3
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: July 22, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.