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Q15XL8 (Q15XL8_PSEA6) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha-L-arabinofuranosidase EMBL ABG39370.1
EC=3.2.1.55 EMBL ABG39370.1
Gene names
Ordered Locus Names:Patl_0842
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG39370.1
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length546 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABG39370.1
   Molecular functionGlycosidase EMBL ABG39370.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionalpha-N-arabinofuranosidase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2424 Potential EMBL ABG39370.1
Chain25 – 546522 Potential EMBL ABG39370.1
PRO_5000125172

Sequences

Sequence LengthMass (Da)Tools
Q15XL8 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: FC42DE347BF7C818

FASTA54661,173
        10         20         30         40         50         60 
MNNLLKRFSL LVFILSFSPL IYSATDNFKN PILSGFYPDP SITRSGDTYY MTNSTFEWFP 

        70         80         90        100        110        120 
ALPIHKSKDL VNWELVGYGI SDATHLNLQE GLNDSLGIFA PTIRYHDNTF YIITTCVGCG 

       130        140        150        160        170        180 
GNFIITAKDP AGPWSKPTWL KGAIGIDPSL YWEDGKSYYL GAGLLEAEDK TQWPGKNGIW 

       190        200        210        220        230        240 
MQEIDIESAS LLGQPKQLTF GHAANARWAE GPRLFKIDGE YMLLIGEGGT NEFHAVTVFN 

       250        260        270        280        290        300 
SQSLWGPYVP NHANPVLTHR HLQNTYPIAQ TGHADLVQTQ DEQWWSVVLA KRPQEGITLL 

       310        320        330        340        350        360 
SRETFLAKVV MSRNESGVTP IFNPGVGLLQ PEQPRPNLPW TPVQQEAARD EFNANELSLQ 

       370        380        390        400        410        420 
WNFLRTPSKQ RHALEAGALH LALAPQRIED LANPAFVARR IKHHSFHAST ALNFSSTKQN 

       430        440        450        460        470        480 
EKAGLVLYRR STNHYQLLKQ ANELVLQKTS KRAENGKLIA TEIARVPYTH DSIIMRVDVN 

       490        500        510        520        530        540 
NNMAQFSFGQ NESQLAPIGA PQSVSILSDE VTQRFNGNYV GMYATSSGLV SKAQAQFNWF 


EYSQKN

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References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000388 Genomic DNA. Translation: ABG39370.1.
RefSeqYP_660424.1. NC_008228.1.

3D structure databases

ProteinModelPortalQ15XL8.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ15XL8.

Protein family/group databases

CAZyGH43. Glycoside Hydrolase Family 43.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4173983.
GenomeReviewsGene locus Patl_0842 in contig CP000388_GR.
KEGGpat:Patl_0842.
NMPDRfig|342610.3.peg.3522.
PATRIC23046560. VBIPseAtl25434_0883.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3507.
HOGENOMHBG347235.
OMAPIWIEAP.

Enzyme and pathway databases

BioCycPATL342610:PATL_0842-MONOMER.

Family and domain databases

InterProIPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
IPR006710. Glyco_hydro_43.
IPR023296. Glyco_hydro_43_beta-prop.
[Graphical view]
Gene3DG3DSA:2.60.120.200. ConA_like_subgrp. 1 hit.
G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
KOK01209.
PANTHERPTHR22925. Glyco_hydro_43. 1 hit.
PfamPF04616. Glyco_hydro_43. 1 hit.
[Graphical view]
SUPFAMSSF49899. ConA_like_lec_gl. 1 hit.
SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ15XL8_PSEA6
AccessionPrimary (citable) accession number: Q15XL8
Entry history
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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