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Q15W37 (Q15W37_PSEA6) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABG39901.1
Gene names
Ordered Locus Names:Patl_1375
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG39901.1
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length593 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABG39901.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2323 Potential EMBL ABG39901.1
Chain24 – 593570 Potential EMBL ABG39901.1
PRO_5000125298

Sequences

Sequence LengthMass (Da)Tools
Q15W37 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 5942856BFE956218

FASTA59366,214
        10         20         30         40         50         60 
MILSRALSLI FFAVVITGCG TAENQDKQHT VKSESKVAGI DTANNKLPNA NYLLRDVRDD 

        70         80         90        100        110        120 
VFYFVMPDRF NNGDSSNDNG AVEGGISAGG FDATSNRGFH GGDMQGIEQK LDYLQGMGIT 

       130        140        150        160        170        180 
AIWMTPILRN KAVQRDGVAH HGYWIVDFTE IDPHFGSNDD LKSLIATAHE KGIKVFFDII 

       190        200        210        220        230        240 
TNHTADVVKY EECHHANGDF KAENHCLYKS LQQLAEGDDY TPFVPLREQT VKVPAWLNDP 

       250        260        270        280        290        300 
QFYHNQGDTT FTGESSLNGD FSGLDDLDTE NPKVLQGMIE IYKDLIKEFK PDGFRIDTVR 

       310        320        330        340        350        360 
HVRMPFWQTF SPSIMAYAQE QGIPNFHIFG EVYDPDPAQL SRFTTQGKLP SVLDFGFQQA 

       370        380        390        400        410        420 
AADVFYRKRN PQTIDALFAQ DDLYTDEDSQ ADLLMTFLGN HDMGRTGYFI EQGVPDASNE 

       430        440        450        460        470        480 
EKLQRSILSH AFMYLSRGIP VVYYADEQGF TGDGNDVNAR QDMFPSLVAS DNDDPLLGSS 

       490        500        510        520        530        540 
ASTADNNFDP LHPIYLALGD LAQLRHQHEA LRRGQYESRY FNEDSMMFAF ARKLPQGKEY 

       550        560        570        580        590 
LAVFNAGTEA ASLTLPAQST HYEGLVEATK FNLSDGVIKV TVPALSFALY QAK

« Hide

References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000388 Genomic DNA. Translation: ABG39901.1.
RefSeqYP_660955.1. NC_008228.1.

3D structure databases

ProteinModelPortalQ15W37.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ15W37.

Protein family/group databases

CAZyGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4171872.
GenomeReviewsGene locus Patl_1375 in contig CP000388_GR.
KEGGpat:Patl_1375.
NMPDRfig|342610.3.peg.535.
PATRIC23047728. VBIPseAtl25434_1455.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHBG400745.
OMAFHIFGEV.
PhylomeDBQ15W37.
ProtClustDBCLSK890899.

Enzyme and pathway databases

BioCycPATL342610:PATL_1375-MONOMER.

Family and domain databases

InterProIPR015902. Alpha_amylase.
IPR006046. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ15W37_PSEA6
AccessionPrimary (citable) accession number: Q15W37
Entry history
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: January 25, 2012
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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