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Q15VI3 (RLMF_PSEA6) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosomal RNA large subunit methyltransferase F
EC=2.1.1.181
Alternative name(s):
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene names
Name:rlmF
Ordered Locus Names:Patl_1583
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP]
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length330 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848

Catalytic activity

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848

Subcellular location

Cytoplasm Potential HAMAP MF_01848.

Sequence similarities

Belongs to the methyltransferase superfamily. METTL16/rlmF family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   LigandS-adenosyl-L-methionine
   Molecular functionMethyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionrRNA (adenine-N6-)-methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 330330Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
PRO_0000349923

Sequences

Sequence LengthMass (Da)Tools
Q15VI3 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 927483D31C469D06

FASTA33036,184
        10         20         30         40         50         60 
MTITTTVKAK TLAVNNKNAP HTSATMHPRN VHRNGYPMSA LCQSYPTLEA HVIKAKSGQQ 

        70         80         90        100        110        120 
SIDFSKAASV KALNAALLIH YYGLNMWDIP EGYLCPPVPG RADYIHGLAD LLAKDNKGVV 

       130        140        150        160        170        180 
PTGNRVIGLD IGVGANAIYP IIGSQTYGWD FVGSDIDDVA LKSATTLANN NPKLKPLLAV 

       190        200        210        220        230        240 
RKQHDKAYIF AGIIQPDDHF TFSLCNPPFH KSAEEAAMGS LRKVKGLGRN KQKSNNTGNA 

       250        260        270        280        290        300 
QPITANKLNF AGQSNELWCD GGELAFIQRM IKESVEYQSQ VGWFTCLVSK SLHLKAIETS 

       310        320        330 
ARYFGAKQFM KVDMGQGQKI SRFVAWKFRD

« Hide

References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000388 Genomic DNA. Translation: ABG40105.1.
RefSeqYP_661159.1. NC_008228.1.

3D structure databases

ProteinModelPortalQ15VI3.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ15VI3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4173837.
GenomeReviewsGene locus Patl_1583 in contig CP000388_GR.
KEGGpat:Patl_1583.
NMPDRfig|342610.3.peg.2657.
PATRIC23048196. VBIPseAtl25434_1688.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3129.
HOGENOMHBG747880.
OMAWSFVGSD.
PhylomeDBQ15VI3.
ProtClustDBPRK11727.

Enzyme and pathway databases

BioCycPATL342610:PATL_1583-MONOMER.

Family and domain databases

HAMAPMF_01848. 23SrRNA_methyltr_F.
[Tree]
InterProIPR016909. rRNA_lsu_methyltransferase_F.
IPR010286. SAM-Mtase_prd.
[Graphical view]
KOK06970.
PANTHERPTHR13393. DUF890. 1 hit.
PfamPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFPIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRLMF_PSEA6
AccessionPrimary (citable) accession number: Q15VI3
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: July 25, 2006
Last modified: January 25, 2012
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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