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Q15VD0 (GLGB_PSEA6) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB

EC=2.4.1.18
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name=BE
Gene names
Name:glgB
Ordered Locus Names:Patl_1636
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP]
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesPseudoalteromonadaceaePseudoalteromonas

Protein attributes

Sequence length729 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7297291,4-alpha-glucan branching enzyme GlgB HAMAP-Rule MF_00685
PRO_0000260676

Sites

Active site4071Nucleophile By similarity
Active site4601Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q15VD0 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 2077D0A6391026CE

FASTA72983,113
        10         20         30         40         50         60 
MQLEKQLQHA QCTFPFSHLG LLKTDNAFTI TAWVPNATGI KVIDLATDKA IGSLKRQAQS 

        70         80         90        100        110        120 
DLFTAEFTKG NPPAVYAFEV KNAQGSYRII DPYQFQDQAF HAVHFVDHLP KNVYQQLGAQ 

       130        140        150        160        170        180 
LIDLDVGLKT PIAATRFAVF APNASAVSVI GDFNYWDGSC LPMQKTDFGY WVLVVPGVKA 

       190        200        210        220        230        240 
GDKYKYQIKD AHGNELPHKA DPVGFYAEQY PSHASVVFDH EQYQWQDTKW QQQVKGDKYT 

       250        260        270        280        290        300 
QAMSIYEVHL GSWKRPDSQS GKTYLSYHEL VDELIPYVKD MGYTHLELLP ISEFPFDGSW 

       310        320        330        340        350        360 
GYQPVGLFAP TSRFGGPDDF KYFVDQCHQN GIGVIIDWVP AHFPEDGHGL ARFDGTHVYE 

       370        380        390        400        410        420 
YEDPRKGWHP DWNSCIYDFG KDTVRQFLVA NALFWLDKYH VDGLRVDAVA SMLYLDYSRE 

       430        440        450        460        470        480 
ADEWVPNVDG GNHNYEAISL LQWMNKEVYS HYPNAMTIAE ESTSFAKVSR PVFEGGLGFG 

       490        500        510        520        530        540 
FKWNMGWMHD SLHYISKDPS YRRYHHGEMT FSMVYAYDES FVLPISHDEV VHGKGSLLRK 

       550        560        570        580        590        600 
MPGDEWQQAA NLRCYAAFMY AHPGKKLNFM GNEIGQSAEW NHDSSINWHL LDYDKHSGIQ 

       610        620        630        640        650        660 
ALYRDLNTLY AEYPALHELD HDPAGFEWID HENAEQSTLA MLRQSKGGKQ QVYALSNFTP 

       670        680        690        700        710        720 
VPRTNFRLGV KAPGEYSILL NTDDKQYWGS GHSQNKTIKA DKTPWNNQAY SISVSLPPLA 


TVFILYKGQ 

« Hide

References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000388 Genomic DNA. Translation: ABG40158.1.
RefSeqYP_661212.1. NC_008228.1.

3D structure databases

ProteinModelPortalQ15VD0.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING342610.Patl_1636.

Protein family/group databases

CAZyCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG40158; ABG40158; Patl_1636.
GeneID4174065.
KEGGpat:Patl_1636.
PATRIC23048302. VBIPseAtl25434_1741.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHOG000283037.
KOK00700.
OMAAKLLFMG.
OrthoDBEOG6JX7GT.

Enzyme and pathway databases

BioCycPATL342610:GHGT-1666-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGB_PSEA6
AccessionPrimary (citable) accession number: Q15VD0
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 25, 2006
Last modified: June 11, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries