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Q15UL5 (Q15UL5_PSEA6) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Agarase EMBL ABG40423.1
EC=3.2.1.81 EMBL ABG40423.1
Gene names
Ordered Locus Names:Patl_1904
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG40423.1
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length688 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABG40423.1
   Molecular functionGlycosidase EMBL ABG40423.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionbeta-agarase activity

Inferred from electronic annotation. Source: EC

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3333 Potential EMBL ABG40423.1
Chain34 – 688655 Potential EMBL ABG40423.1
PRO_5000125411

Sequences

Sequence LengthMass (Da)Tools
Q15UL5 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: 53E1C97B62C268D9

FASTA68877,755
        10         20         30         40         50         60 
MIKKYNNKWS LQKVAVTLLL TTTSNSFNIV HAAENKVSVD VNLDTKHRIG NIERFNREKF 

        70         80         90        100        110        120 
ISLHSAPTEN EWDHDNKGNN AKSDLIGSFI NGYDVYFGRD TGYMKNQLFA QKQDGNRLGF 

       130        140        150        160        170        180 
IDESVLTTKG NAAINSFENS NATRFVNARR FKNRSKDMVV GGQVHPYYPD GTNIGNSNWA 

       190        200        210        220        230        240 
FSQKNTDQEP IGTATGHYMG QFLQKYFAQT NTAAGAPKPA YLEVVNEPLY DLNIAPKDGR 

       250        260        270        280        290        300 
DKAPIADIFK YHKSVAQEIR KSNNQALNKN IKVAGYTVAF PNYDWDNFER WESNDKFFID 

       310        320        330        340        350        360 
TAGADMDVFS IHLYDFPTHP RGEEYRRGSN VEATLDMLEQ YSNIKFGRTK PLLISEYGAS 

       370        380        390        400        410        420 
VHALRNKPWS QVRDAEKLRG YNALLTHFLE RPDVIAKAIP FIPVKAEWGR HGDTGYPYEN 

       430        440        450        460        470        480 
RLMRQQFEKA GQTGTDWIYT DLVKFFELWS EVKGIHVDSW ASDLDIMVDA YVQNNKAHII 

       490        500        510        520        530        540 
MTSLEFQDTD VALKALGIDG NTIKSVQVKT LSYDNNNHAK LATKTMSSVP KTVSLPKEST 

       550        560        570        580        590        600 
QIMTITYHNK INIDKVNQQN KYYATTYKQP IKANVDMYFN IKDVEVGAQG EAVLRLGIGR 

       610        620        630        640        650        660 
EHGKSLTPTV NVNNVPVEVP TDFRGYDQKQ GKTRNGRASF FGVIEIPVSH DLLQGSNWIR 

       670        680 
INFDDAGGFV TSAALQVVNS SDEITRSL

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References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000388 Genomic DNA. Translation: ABG40423.1.
RefSeqYP_661477.1. NC_008228.1.

3D structure databases

ProteinModelPortalQ15UL5.
ModBaseSearch...

Protein family/group databases

CAZyGH86. Glycoside Hydrolase Family 86.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4172750.
GenomeReviewsGene locus Patl_1904 in contig CP000388_GR.
KEGGpat:Patl_1904.
NMPDRfig|342610.3.peg.3632.
PATRIC23048902. VBIPseAtl25434_2039.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG204883.
OMATATGHYM.
ProtClustDBCLSK507166.

Enzyme and pathway databases

BioCycPATL342610:PATL_1904-MONOMER.

Family and domain databases

InterProIPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK01219.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ15UL5_PSEA6
AccessionPrimary (citable) accession number: Q15UL5
Entry history
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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