Q15UE9 (Q15UE9_PSEA6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Agarase EMBL ABG40489.1
EC=3.2.1.81 EMBL ABG40489.1

Gene names

Ordered Locus Names:

Patl_1971

Organism

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG40489.1

Taxonomic identifier

342610 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length	793 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABG40489.1
Molecular function	Glycosidase EMBL ABG40489.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	beta-galactosidase complex Inferred from electronic annotation. Source: InterPro
Molecular function	beta-agarase activity Inferred from electronic annotation. Source: EC beta-galactosidase activity Inferred from electronic annotation. Source: InterPro cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 22	22	Potential EMBL ABG40489.1
	Chain	23 – 793	771	Potential EMBL ABG40489.1		PRO_5000125425

Sequences

	Sequence		Length	Mass (Da)
	Q15UE9 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: B4F4C468ED3B3B9E	FASTA	793	88,977
	10 20 30 40 50 60 MNASKKLLFV AIVTALTGCS ASETSDEVSH SSAAEVQPVD HIEQQVKTLK TLFTAKDSDS 70 80 90 100 110 120 LKQVKYTNAS GTVVGTSGDS LKVVFHGKEN INSAVEFIPD VAWDWSDLDD FNIAFDIGNE 130 140 150 160 170 180 GEHSVQLFLN ISDTNGDTYT RSVSVPVGPQ STYYAKMAGH DLAKSISDDK NEFNFTSGLR 190 200 210 220 230 240 SNPDTWHSDD KQFISLWGKK NLKLSGISKI SLSVQNNLFD KQITINDIRL RQNPPMDTLY 250 260 270 280 290 300 LTGVVDQFGQ NAKREFDGKV HSLEELYSAR DKELKTLDGK WNAPRSKWGG WLNGPKLEGT 310 320 330 340 350 360 GNFRTAKYQG KWSLVDPDGY LYFATGVDII RLANSSTMTG YDFPPEVLVK ADNADVTPSD 370 380 390 400 410 420 SQGLNRVADS AVPSRFVASE LRKDLFTWLP SYEEPMGQHY GYRTGVHSGP LKQGETYSFY 430 440 450 460 470 480 AANLDRKYSE MTPDYMQKWH DVTLDRMRNW GFTSLGNWTD PAFYDNQKVP FFANGWIIGD 490 500 510 520 530 540 YKTVSSGDDF WGNMPDVFDP TFKERALHTV SVIAQEVKNT PWCVGVFIDN EKSFGRSETP 550 560 570 580 590 600 QSRYGIVFNT LKRDGSEVPT KAAFTTMLKD KYASIEALNA AWGKNISSWS EFNKGIDSVL 610 620 630 640 650 660 ATDETHAEQQ LADYSDMLYA YAEKYFSTVD AAMQTYLPNH LYLGSRFADW GMPMEVAKAA 670 680 690 700 710 720 TQYVDVMSYN VYKEGLHPKG WGFLKEFDMP SIVGEFHIGA TDSGLFHPGL VHAANQQDRA 730 740 750 760 770 780 DMYQDYMGTI IDNPYFIGAH WFQYMDSPIT GRAFDGENYN VGFVNVTDTP YAPMVNAAKD 790 LHKGMYERRF TSN

References

[1]

"Complete sequence of Pseudoalteromonas atlantica T6c." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000388 Genomic DNA. Translation: ABG40489.1.
RefSeq	YP_661543.1. NC_008228.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q15UE9.
Protein family/group databases
CAZy	GH50. Glycoside Hydrolase Family 50.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4172106.
GenomeReviews	Gene locus Patl_1971 in contig CP000388_GR.
KEGG	pat:Patl_1971.
NMPDR	fig|342610.3.peg.1641.
PATRIC	23049044. VBIPseAtl25434_2110.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG10914.
HOGENOM	HBG217192.
OMA	LDGENGH.
ProtClustDB	CLSK569844.
Enzyme and pathway databases
BioCyc	PATL342610:PATL_1971-MONOMER.
Family and domain databases
InterPro	IPR013529. Glyco_hydro_42_N. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K01219.
Pfam	PF02449. Glyco_hydro_42. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q15UE9_PSEA6

Accession

Primary (citable) accession number: Q15UE9

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)