Q15TD0 (Q15TD0_PSEA6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Agarase EMBL ABG40858.1
EC=3.2.1.81 EMBL ABG40858.1

Gene names

Ordered Locus Names:

Patl_2341

Organism

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG40858.1

Taxonomic identifier

342610 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length	1171 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABG40858.1
Molecular function	Glycosidase EMBL ABG40858.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	polysaccharide catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	beta-agarase activity Inferred from electronic annotation. Source: EC cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 24	24	Potential EMBL ABG40858.1
	Chain	25 – 1171	1147	Potential EMBL ABG40858.1		PRO_5000125504

Sequences

	Sequence		Length	Mass (Da)
	Q15TD0 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: 4078EC798099D19A	FASTA	1,171	128,531
	10 20 30 40 50 60 MLKVIPWLLV TSSLVAIPTY IHATTEVVVN LNVKHSVEGK SEFERKNHIK LHSTLNDNDW 70 80 90 100 110 120 QGEEDKLKYM MEELDVYFGR DNGGTVWNFN QAIEDPANIG YADPQNIIAR GQAQRETNWG 130 140 150 160 170 180 QNKSALHQYD GRGDLMIGGQ PRAHYLGNTS PCCGGSAWQA KGGDAVGDFL GQYVNEFFRS 190 200 210 220 230 240 AGDPVTKGHL APVYFEVLNE PLYQVTDAPH ELGLEQPIPP IDIFTFHNDV ADAFRQHNTH 250 260 270 280 290 300 IKIGGFTVAF PIFEQREFAR WEERMKLFID TSGSHMDVYS THFYDLEDDN RFKGSRLEAT 310 320 330 340 350 360 LDMIDQYSLL ALGETKPHVI SEYGGRNRPM ENAPWSALRD WWFLKTASPM LMQFLSRPDS 370 380 390 400 410 420 VLTSIPFVPI KALWGTAADG TPYNWRLLRQ QKEAPNETGE NWVFTEMVKF YQLWSDVKGT 430 440 450 460 470 480 RVDTFSTNSD FLIDSYVQND KAYVLISNLT EQAEKIVVHK YGAPASSQPT TRIKHLYLKG 490 500 510 520 530 540 AAPALDETSH ASDIQEVTIA AEATMVIEYD YPSDIVINET SQEKKYFATE YLKPISANQI 550 560 570 580 590 600 SRFNINSVAT SALGEGILRV VVGRKLGKSL APTIAVNGET LTASAQISGD IQNTRGDFFG 610 620 630 640 650 660 VIEFPVPIDL LRTNNEIDVT FGDDGGHIAS VNLKVFSFTS DVRPSAGPVK GITIEPTSAV 670 680 690 700 710 720 VAVGSTLQLN PTITPYFATN QNYFLQSSAP EVATVTQTGL VSALMQGEAR ITATTEEGSF 730 740 750 760 770 780 IAQVDIEVEL PSPTSITFDD QSIYASTVYT AGEAMHVTTE YDAGTGHTVT AALGGVEYRL 790 800 810 820 830 840 RHLTASFGLI SDVAIVQDGH AVNTQRGTSS VELALPTNLQ ASADLPDGEF YFLFVRVVSS 850 860 870 880 890 900 NGETQSTSAF PVSIEAGNID TSPSLTLDDA RKYRDTIYKT DQQLTVTAHY QAGDGNTVTS 910 920 930 940 950 960 EQGGVRFYLR ELDANFGLIN DIIIEDASAI GQQVGAATAT FSLADLTPSA ALPAGHFYYL 970 980 990 1000 1010 1020 FAVFNSTNGD KYNIPGVFPI RIEQEVSELS LTFSEPNLYR STDYEVGGSL AVSVDFDMGT 1030 1040 1050 1060 1070 1080 GNAVSDELGG IRFFLRHLRE DYSMVKDIIL EDANAIGQQS GSASVTFSLA NIAASDALPA 1090 1100 1110 1120 1130 1140 NDFYFLYVLV KSTDGATQDL AVQRINIVSP ALVGDYDLDG DVDINDIQSL IVAIHMRQSI 1150 1160 1170 DLSFDMNSDG TVNLLDTRLL MNACTRTRCA P

References

[1]

"Complete sequence of Pseudoalteromonas atlantica T6c." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000388 Genomic DNA. Translation: ABG40858.1.
RefSeq	YP_661912.1. NC_008228.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q15TD0.
Protein family/group databases
CAZy	GH86. Glycoside Hydrolase Family 86.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4172495.
GenomeReviews	Gene locus Patl_2341 in contig CP000388_GR.
KEGG	pat:Patl_2341.
NMPDR	fig|342610.3.peg.1515.
PATRIC	23049830. VBIPseAtl25434_2501.
Organism-specific databases
CMR	Search...
Phylogenomic databases
ProtClustDB	CLSK2778768.
Enzyme and pathway databases
BioCyc	PATL342610:PATL_2341-MONOMER.
Family and domain databases
InterPro	IPR003343. Big_2. IPR016134. Cellulos_enz_dockerin_1. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR008964. Invasin/intimin_cell_adhesion. [Graphical view]
Gene3D	G3DSA:1.10.1330.10. Cellulos_enz_dockerin_1. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K01219.
Pfam	PF02368. Big_2. 1 hit. [Graphical view]
SMART	SM00635. BID_2. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit. SSF49373. Invasin_intimin. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q15TD0_PSEA6

Accession

Primary (citable) accession number: Q15TD0

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	December 14, 2011
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)