Q15SN6 (Q15SN6_PSEA6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ABG41102.1
EC=1.1.99.1 EMBL ABG41102.1

Gene names

Ordered Locus Names:

Patl_2587

Organism

Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG41102.1

Taxonomic identifier

342610 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length	556 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL ABG41102.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q15SN6 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: EC8A0DD12504B9AF	FASTA	556	60,757
	10 20 30 40 50 60 MAEQTYDYII VGAGSAGCVL ANRLSEDANN QVLLLETGGS DKNIFIKMPT ALSIPMNTEK 70 80 90 100 110 120 LAWQFHTEAE PYLDNRKMHC PRGKVLGGSS SINGMVYVRG HAKDFDEWQE HGAQGWDYQS 130 140 150 160 170 180 CLPYFQKAET FYLGKDAYRG DKGPLGVNNG NEMANPLYTA FIEAGKQAGY AATDDYNAAQ 190 200 210 220 230 240 QEGFGPMHMT VKDGVRSSAS REYLDPVKSR KNLTIVTGAL AEKVLLDGKK AVGVEYSING 250 260 270 280 290 300 NKTSAKASKE VVLSAGSIGS PHLLQLSGIG DSDTLTAAGV EVKHHLPGVG QNLQDHLEFY 310 320 330 340 350 360 FQYKCKQPIT LNGKLGLISK GLIGARWLFT RKGLGATNHF ESCAFIRSKP GVEWPDIQYH 370 380 390 400 410 420 FLPAAMRYDG RSAFDGHGFQ VHVGHNKPKS RGAVTIKSAD PTEAPKIQFN YLQHQDDIEG 430 440 450 460 470 480 FRACVRLTRE IIEQSAFDDY RDDEIQPGKH IQTDEEIDAF VRQATESAYH PSCSCRMGED 490 500 510 520 530 540 AMAVVNSSTQ VHGIQGLRVV DSSIFPTVPN GNLNAPTIMV AEKAADMILG KPALSQAQVT 550 VATSSNWQTV QRNATI

References

[1]

"Complete sequence of Pseudoalteromonas atlantica T6c." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000388 Genomic DNA. Translation: ABG41102.1.
RefSeq	YP_662156.1. NC_008228.1.
3D structure databases
ProteinModelPortal	Q15SN6.
ModBase	Search...
Protein-protein interaction databases
STRING	Q15SN6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4174347.
GenomeReviews	Gene locus Patl_2587 in contig CP000388_GR.
KEGG	pat:Patl_2587.
NMPDR	fig|342610.3.peg.911.
PATRIC	23050384. VBIPseAtl25434_2764.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	HMTVKNG.
PhylomeDB	Q15SN6.
ProtClustDB	PRK02106.
Enzyme and pathway databases
BioCyc	PATL342610:PATL_2587-MONOMER.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q15SN6_PSEA6

Accession

Primary (citable) accession number: Q15SN6

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	January 25, 2012
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)