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Q15PN5 (Q15PN5_PSEA6) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Heparinase II/III-like protein EMBL ABG42153.1
Gene names
Ordered Locus Names:Patl_3651
OrganismPseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) [Complete proteome] [HAMAP] EMBL ABG42153.1
Taxonomic identifier342610 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Pseudoalteromonadaceae › Pseudoalteromonas

Protein attributes

Sequence length748 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABG42153.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: InterPro

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL ABG42153.1
Chain26 – 748723 Potential EMBL ABG42153.1
PRO_5000125800

Sequences

Sequence LengthMass (Da)Tools
Q15PN5 [UniParc].

Last modified July 25, 2006. Version 1.
Checksum: A10C5E9F09A57A0D

FASTA74883,584
        10         20         30         40         50         60 
MKKMKMTALL LVAAALNAPL ALQAQEHPNL IMTKSGIEKV RQNLGNVPLF DASVQSVKNE 

        70         80         90        100        110        120 
VDAEIALGID TPIPKDFSGG YTHQRHKLNF LTAQKAGALY QILQDDKYAK YIRDMLFQYE 

       130        140        150        160        170        180 
AMYIDLPVHP QERSYARGKL FWQCLNDSNW LVYMAQAYDA IYDTLSAQER DKLENNLFRP 

       190        200        210        220        230        240 
FADFISVENP QFYNRVHNHS TWGNAAVGMI ALVMDDEELL DRALYGIEDD GLELGGRDND 

       250        260        270        280        290        300 
GGFIKVAGQK AGFLANLEDP FSPDGYYTEG PYYQRYAMYP FLIFGLAMNH VKPEMKVFSH 

       310        320        330        340        350        360 
KDNVLLKGVD ALLNLTDADG EFFPLNDGQK GMSYYTPALV TAVDIAYQYG EQNPQLLSIA 

       370        380        390        400        410        420 
EKQNQVLLDQ SGLAVAMGIR DGKAQPFVKN SINLSDGQEG DQGGVSVLRY GNEELTLVFK 

       430        440        450        460        470        480 
YAAQGLSHGH YDKLSFSLYE SGDEVLQDYG LARFVNIGQK GGGNYLKENK TWAKTTIAHN 

       490        500        510        520        530        540 
TLSINEKMHF SGKYEIASEH HSDLYFYDDT KDDVQVVSAT ESNAYPGTKM HRTMAIIKNE 

       550        560        570        580        590        600 
GLEKPFLLDI MKVKSDSKNQ YDLPFYYMGQ VLSDNFEYDS PTSLNPLGDQ NGYQHLYLEG 

       610        620        630        640        650        660 
KGKPSSSTTQ FSWLGDGKYY TLTSATEESD ELLLTRLGAN DPDFNLRRDA AFMLRRKDSG 

       670        680        690        700        710        720 
NTTFASVVEP HGSYSPVSEL SVNSDSSIAE LSVVHDDDAY TAVSIESLKG VKSVFILANK 

       730        740 
DATKSKQHKL KVNGKVFSWT GPYFYAGS

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References

[1]"Complete sequence of Pseudoalteromonas atlantica T6c."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Karls A.C., Bartlett D., Higgins B.P., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: T6c / ATCC BAA-1087.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000388 Genomic DNA. Translation: ABG42153.1.
RefSeqYP_663207.1. NC_008228.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ15PN5.

Protein family/group databases

CAZyPL17. Polysaccharide Lyase Family 17.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4175431.
GenomeReviewsGene locus Patl_3651 in contig CP000388_GR.
KEGGpat:Patl_3651.
NMPDRfig|342610.3.peg.3692.
PATRIC23052662. VBIPseAtl25434_3881.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG45022.
HOGENOMHBG742331.
OMAATESNAY.
ProtClustDBCLSK769500.

Enzyme and pathway databases

BioCycPATL342610:PATL_3651-MONOMER.

Family and domain databases

InterProIPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
IPR012480. Hepar_II_III.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
PfamPF05426. Alginate_lyase. 1 hit.
PF07940. Hepar_II_III. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ15PN5_PSEA6
AccessionPrimary (citable) accession number: Q15PN5
Entry history
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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