Q15714 (T22D1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 108.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: TSC22 domain family protein 1 Alternative name(s): Cerebral protein 2 Regulatory protein TSC-22 TGFB-stimulated clone 22 homolog Transforming growth factor beta-1-induced transcript 4 protein | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1073 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Transcriptional repressor. Acts on the C-type natriuretic peptide (CNP) promoter. |
| Subunit structure | Homodimer or heterodimer. Can form an heterodimer with TSC22D4. |
| Subcellular location | |
| Tissue specificity | Widely expressed in fetal and adult tissues. |
| Induction | In aortic endothelial cells, induced by cytokines, including TGFB1. |
| Sequence similarities | Belongs to the TSC-22/Dip/Bun family. |
| Sequence caution | The sequence BAC02703.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Cellular component | Cytoplasm Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Molecular function | Repressor |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | transcription from RNA polymerase II promoter Traceable author statement. Source: ProtInc |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell nucleusInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | |||||||||
| Isoform 1 (identifier: Q15714-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | |||||||||
| Isoform 2 (identifier: Q15714-2) The sequence of this isoform differs from the canonical sequence as follows: 1-921: Missing. 922-970: VGLPQTISGD...TTPLVDGEDE → MKSQWCRPVA...TENASVRLDN | |||||||||
Sequence annotation (Features) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
| Sequence conflict | 15 | 1 | V → A in BAB46917. Ref.4 | ||||||
| Isoform 3 (identifier: Q15714-3) The sequence of this isoform differs from the canonical sequence as follows: 1-488: Missing. | |||||||||
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1073 | 1073 | TSC22 domain family protein 1 | PRO_0000219365 | |||||
Regions | |||||||||
| Domain | 1006 – 1027 | 22 | Leucine-zipper | ||||||
| Compositional bias | 59 – 82 | 24 | Pro-rich | ||||||
| Compositional bias | 195 – 241 | 47 | His-rich | ||||||
| Compositional bias | 497 – 817 | 321 | Gln-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 263 | 1 | Phosphoserine Ref.14 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 921 | 921 | Missing in isoform 2. | VSP_035325 | |||||
| Alternative sequence | 1 – 488 | 488 | Missing in isoform 3. | VSP_035324 | |||||
| Alternative sequence | 922 – 970 | 49 | VGLPQ…DGEDE → MKSQWCRPVAMDLGVYQLRH FSISFLSSLLGTENASVRLD N in isoform 2. | VSP_035326 | |||||
| Natural variant | 652 | 1 | P → S. Corresponds to variant rs9525983 [ dbSNP | Ensembl ]. | VAR_057311 | |||||
Experimental info | |||||||||
| Sequence conflict | 332 | 1 | M → I in BAC02703. Ref.6 | ||||||
| Sequence conflict | 581 | 1 | P → L in CAH10539. Ref.12 | ||||||
| Sequence conflict | 661 | 1 | P → S in CAH10539. Ref.12 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning of the human homologue of the TGF beta-stimulated clone 22 gene." Jay P., Wei J.W., Marsollier C., Taviaux S., Berge-Lefranc J.-L., Berta P. Biochem. Biophys. Res. Commun. 222:821-826(1996) [PubMed: 8651929] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). |
| [2] | "Molecular cloning and characterization of a transcription factor for the C-type natriuretic peptide gene promoter." Ohta S., Shimekake Y., Nagata K. Eur. J. Biochem. 242:460-466(1996) [PubMed: 9022669] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Tissue: Kidney. |
| [3] | "The characteristics of different types of mRNA expressed in the human brain." Dmitrenko V.V., Garifulin O.M., Shostak E.A., Smikodub A.I., Kavsan V.M. Cyt. Genet. 30:41-47(1996) [PubMed: 9026990] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Tissue: Brain. |
| [4] | "Hucep-2, a gene which is expressed in the human brain, is a homologue of rodent and chicken TSC-22." Yazaki M., Takayama K., Matsumoto K., Yoshimoto M. Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Tissue: Brain cortex. |
| [5] | "Cloning and characterization of human TSC-22 genomic DNA." Kawamata H., Uchida D., Omotehara F., Hino S., Nakashiro K., Miwa Y., Begum N., Hoque M.O., Yoshida H., Sato M. Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [6] | "Characterization of size-fractionated cDNA libraries generated by the in vitro recombination-assisted method." Ohara O., Nagase T., Mitsui G., Kohga H., Kikuno R., Hiraoka S., Takahashi Y., Kitajima S., Saga Y., Koseki H. DNA Res. 9:47-57(2002) [PubMed: 12056414] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [7] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Brain cortex. |
| [8] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). |
| [9] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Fetal brain. |
| [10] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed: 15057823] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [11] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [12] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). Tissue: Brain, Colon, Lung, Ovary and Testis. |
| [13] | "Transforming growth factor-beta-stimulated clone-22 is a member of a family of leucine zipper proteins that can homo- and heterodimerize and has transcriptional repressor activity." Kester H.A., Blanchetot C., den Hertog J., van der Saag P.T., van der Burg B. J. Biol. Chem. 274:27439-27447(1999) [PubMed: 10488076] [Abstract] Cited for: CHARACTERIZATION. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-263, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | U35048 mRNA. Translation: AAC50566.1. D38585 mRNA. Translation: BAA07598.1. AJ222700 mRNA. Translation: CAA10951.1. D87061 mRNA. Translation: BAB46917.1. AF256226 Genomic DNA. Translation: AAG53077.1. AB082525 mRNA. Translation: BAC02703.1. Different initiation. AK312345 mRNA. Translation: BAG35266.1. CR456711 mRNA. Translation: CAG32992.1. CR627459 mRNA. Translation: CAH10539.1. AL138960, AL139184 Genomic DNA. Translation: CAI12991.1. AL139184, AL138960 Genomic DNA. Translation: CAI16499.1. CH471075 Genomic DNA. Translation: EAX08710.1. BC000456 mRNA. Translation: AAH00456.1. BC016867 mRNA. Translation: AAH16867.1. BC069207 mRNA. Translation: AAH69207.1. BC105277 mRNA. Translation: AAI05278.1. BC136475 mRNA. Translation: AAI36476.1. BC136482 mRNA. Translation: AAI36483.1. BC146664 mRNA. Translation: AAI46665.1. BC146679 mRNA. Translation: AAI46680.1. |
| IPI | IPI00019355. IPI00301610. IPI00942808. |
| PIR | JC4813. |
| RefSeq | NP_001230728.1. NM_001243799.1. NP_006013.1. NM_006022.3. NP_904358.2. NM_183422.3. |
| UniGene | Hs.507916. |
3D structure databases | |
| ProteinModelPortal | Q15714. |
| SMR | Q15714. Positions 988-1043. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q15714. 12 interactions. |
| MINT | MINT-1367987. |
| STRING | Q15714. |
PTM databases | |
| PhosphoSite | Q15714. |
Polymorphism databases | |
| DMDM | 205371839. |
Proteomic databases | |
| PRIDE | Q15714. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000458659; ENSP00000397435; ENSG00000102804. |
| GeneID | 8848. |
| KEGG | hsa:8848. |
| UCSC | uc001uzm.2. human. |
Organism-specific databases | |
| CTD | 8848. |
| GeneCards | GC13M045007. |
| H-InvDB | HIX0037340. |
| HGNC | HGNC:16826. TSC22D1. |
| MIM | 607715. gene. |
| neXtProt | NX_Q15714. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | prNOG09098. |
| GeneTree | ENSGT00530000063062. |
| HOGENOM | HBG282423. |
| HOVERGEN | HBG108540. |
| InParanoid | Q15714. |
| OrthoDB | EOG4X3H2T. |
Gene expression databases | |
| ArrayExpress | Q15714. |
| Bgee | Q15714. |
| CleanEx | HS_TSC22D1. |
| Genevestigator | Q15714. |
| GermOnline | ENSG00000102804. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR000580. TSC-22_Dip_Bun. [Graphical view] |
| PANTHER | PTHR12348. TSC-22_Dip_Bun. 1 hit. |
| Pfam | PF01166. TSC22. 1 hit. [Graphical view] |
| ProDom | PD007152. TSC-22_Dip_Bun. 1 hit. [Graphical view] [Entries sharing at least one domain] |
| PROSITE | PS01289. TSC22. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 33215. |
| SOURCE | Search... |
Entry information
| Entry name | T22D1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q15714 Secondary accession number(s): B9EGI0 Q96JS5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with