Q15654 (TRIP6_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 123.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Thyroid receptor-interacting protein 6 Short name=TR-interacting protein 6 Short name=TRIP-6 Alternative name(s): Opa-interacting protein 1 Short name=OIP-1 Zyxin-related protein 1 Short name=ZRP-1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 476 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Relays signals from the cell surface to the nucleus to weaken adherens junction and promote actin cytoskeleton reorganization and cell invasiveness. Involved in lysophosphatidic acid-induced cell adhesion and migration. Acts as a transcriptional coactivator for NF-kappa-B and JUN, and mediates the transrepression of these transcription factors induced by glucocorticoid receptor. Ref.9 Ref.10 Ref.14 Ref.19 |
| Subunit structure | Specifically interacts with the ligand binding domain of the thyroid receptor (TR) in the presence of thyroid hormone. Interacts with PTPN13. Interacts with SVIL isoform 2. Interacts with LPAR2 but not other LPA receptors. Interacts with PRKAA2. Interacts with MAGI1. Interacts with SCRIB By similarity. Binds to S.typhimurium protein sseI. Ref.2 Ref.10 Ref.11 Ref.14 Ref.15 Ref.16 Ref.17 Ref.19 |
| Subcellular location | Cytoplasm › cytoskeleton. Cell junction › focal adhesion. Nucleus. Cytoplasm. Note: Shuttles between nucleus and cytoplasm. Ref.14 |
| Tissue specificity | Abundantly expressed in kidney, liver and lung. Lower levels in heart, placenta and pancreas. Expressed in colonic epithelial cells. Up-regulated in colonic tumors. Ref.19 |
| Domain | The LIM zinc-binding domains mediate interaction with LPAR2 and with S.typhimurium protein sseI. |
| Post-translational modification | Phosphorylation at Tyr-55 by SRC is required for enhancement of lysophosphatidic acid-induced cell migration. Tyr-55 is dephosphorylated by PTPN13. Ref.12 Ref.17 |
| Sequence similarities | Belongs to the zyxin/ajuba family. Contains 3 LIM zinc-binding domains. |
| Sequence caution | The sequence AAC41740.1 differs from that shown. Reason: Frameshift at position 461. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ATN1 | P54259 | 2 | EBI-742327,EBI-945980 | |
| Hoxa1 | P09022 | 3 | EBI-742327,EBI-3957603 | From a different organism. |
| HOXA9 | P31269 | 4 | EBI-742327,EBI-742314 | |
| PPP1R16A | Q96I34 | 3 | EBI-742327,EBI-710402 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 476 | 476 | Thyroid receptor-interacting protein 6 | PRO_0000075908 | ||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||
| Domain | 279 – 316 | 38 | LIM zinc-binding 1 | |||||||||||||||||||||||||||||||||
| Domain | 339 – 398 | 60 | LIM zinc-binding 2 | |||||||||||||||||||||||||||||||||
| Domain | 399 – 467 | 69 | LIM zinc-binding 3 | |||||||||||||||||||||||||||||||||
| Region | 469 – 476 | 8 | Interaction with MAGI1 and PTPN13 | |||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||
| Modified residue | 55 | 1 | Phosphotyrosine; by SRC Ref.12 Ref.17 | |||||||||||||||||||||||||||||||||
| Modified residue | 92 | 1 | Phosphoserine Ref.13 Ref.20 | |||||||||||||||||||||||||||||||||
| Modified residue | 142 | 1 | Phosphoserine Ref.18 | |||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||
| Natural variant | 111 | 1 | R → Q. Ref.7 Corresponds to variant rs2437100 [ dbSNP | Ensembl ]. | VAR_062262 | ||||||||||||||||||||||||||||||||
| Natural variant | 230 | 1 | V → I. Ref.7 Corresponds to variant rs2075756 [ dbSNP | Ensembl ]. | VAR_050171 | ||||||||||||||||||||||||||||||||
| Natural variant | 296 | 1 | L → F. Ref.7 Corresponds to variant rs17855370 [ dbSNP | Ensembl ]. | VAR_013309 | ||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||
| Mutagenesis | 101 | 1 | S → A: Exclusively located in nucleus. Ref.14 | |||||||||||||||||||||||||||||||||
| Mutagenesis | 102 | 1 | S → A: Exclusively located in nucleus. Ref.14 | |||||||||||||||||||||||||||||||||
| Mutagenesis | 474 | 1 | T → A: Reduces interaction with MAGI1. Ref.19 | |||||||||||||||||||||||||||||||||
| Sequence conflict | 39 – 40 | 2 | Missing in AAH02680. Ref.7 | |||||||||||||||||||||||||||||||||
| Sequence conflict | 102 | 1 | S → T in AAB62222. Ref.2 | |||||||||||||||||||||||||||||||||
| Sequence conflict | 106 | 1 | E → K in AAB62222. Ref.2 | |||||||||||||||||||||||||||||||||
| Sequence conflict | 135 | 1 | S → C in CAA05080. Ref.1 | |||||||||||||||||||||||||||||||||
| Sequence conflict | 310 – 313 | 4 | CRAQ → MPGP in AAC41740. Ref.8 | |||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||
| Beta strand | 280 – 282 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 288 – 290 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 296 – 300 | 5 | ||||||||||||||||||||||||||||||||||
| Turn | 302 – 304 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 308 – 310 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 319 – 324 | 6 | ||||||||||||||||||||||||||||||||||
| Beta strand | 326 – 328 | 3 | ||||||||||||||||||||||||||||||||||
| Helix | 329 – 337 | 9 | ||||||||||||||||||||||||||||||||||
| Turn | 340 – 342 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 351 – 353 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 356 – 358 | 3 | ||||||||||||||||||||||||||||||||||
| Turn | 360 – 362 | 3 | ||||||||||||||||||||||||||||||||||
| Beta strand | 366 – 368 | 3 | ||||||||||||||||||||||||||||||||||
| Helix | 388 – 394 | 7 | ||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The human TRIP6 gene encodes a LIM domain protein and maps to chromosome 7q22, a region associated with tumorigenesis." Yi J., Beckerle M.C. Genomics 49:314-316(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "ZRP-1, a zyxin-related protein, interacts with the second PDZ domain of the cytosolic protein tyrosine phosphatase hPTP1E." Murthy K.K., Clark K., Fortin Y., Shen S.-H., Banville D. J. Biol. Chem. 274:20679-20687(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], INTERACTION WITH PTPN13. |
| [3] | "Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5." Wilson M.D., Riemer C., Martindale D.W., Schnupf P., Boright A.P., Cheung T.L., Hardy D.M., Schwartz S., Scherer S.W., Tsui L.-C., Miller W., Koop B.F. Nucleic Acids Res. 29:1352-1365(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [5] | "Human chromosome 7: DNA sequence and biology." Scherer S.W., Cheung J., MacDonald J.R., Osborne L.R., Nakabayashi K., Herbrick J.-A., Carson A.R., Parker-Katiraee L., Skaug J., Khaja R., Zhang J., Hudek A.K., Li M., Haddad M., Duggan G.E., Fernandez B.A., Kanematsu E., Gentles S. Tsui L.-C.Science 300:767-772(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS GLN-111; ILE-230 AND PHE-296. Tissue: Cervix, Kidney and Pancreas. |
| [8] | "Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor." Lee J.W., Choi H.-S., Gyuris J., Brent R., Moore D.D. Mol. Endocrinol. 9:243-254(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 310-476. |
| [9] | "A nuclear isoform of the focal adhesion LIM-domain protein Trip6 integrates activating and repressing signals at AP-1- and NF-kappaB-regulated promoters." Kassel O., Schneider S., Heilbock C., Litfin M., Goettlicher M., Herrlich P. Genes Dev. 18:2518-2528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [10] | "TRIP6 enhances lysophosphatidic acid-induced cell migration by interacting with the lysophosphatidic acid 2 receptor." Xu J., Lai Y.-J., Lin W.-C., Lin F.-T. J. Biol. Chem. 279:10459-10468(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH LPAR2, FUNCTION. |
| [11] | "The tumor suppressor Scrib selectively interacts with specific members of the zyxin family of proteins." Petit M.M.R., Crombez K.R.M.O., Vervenne H.B.V.K., Weyns N., Van de Ven W.J.M. FEBS Lett. 579:5061-5068(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SCRIB. |
| [12] | "c-Src-mediated phosphorylation of TRIP6 regulates its function in lysophosphatidic acid-induced cell migration." Lai Y.-J., Chen C.-S., Lin W.-C., Lin F.-T. Mol. Cell. Biol. 25:5859-5868(2005) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION AT TYR-55. |
| [13] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-92, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "TRIP6 transcriptional co-activator is a novel substrate of AMP-activated protein kinase." Solaz-Fuster M.C., Gimeno-Alcaniz J.V., Casado M., Sanz P. Cell. Signal. 18:1702-1712(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PRKAA2, SUBCELLULAR LOCATION, MUTAGENESIS OF SER-101 AND SER-102, FUNCTION. |
| [15] | "Supervillin modulation of focal adhesions involving TRIP6/ZRP-1." Takizawa N., Smith T.C., Nebl T., Crowley J.L., Palmieri S.J., Lifshitz L.M., Ehrhardt A.G., Hoffman L.M., Beckerle M.C., Luna E.J. J. Cell Biol. 174:447-458(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SVIL. |
| [16] | "Salmonella typhimurium disseminates within its host by manipulating the motility of infected cells." Worley M.J., Nieman G.S., Geddes K., Heffron F. Proc. Natl. Acad. Sci. U.S.A. 103:17915-17920(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SALMONELLA TYPHIMURIUM SSEI. |
| [17] | "PTPL1/FAP-1 negatively regulates TRIP6 function in lysophosphatidic acid-induced cell migration." Lai Y.-J., Lin W.-C., Lin F.-T. J. Biol. Chem. 282:24381-24387(2007) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PTPN13, PHOSPHORYLATION AT TYR-55. |
| [18] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-142, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [19] | "TRIP6, a novel molecular partner of the MAGI-1 scaffolding molecule, promotes invasiveness." Chastre E., Abdessamad M., Kruglov A., Bruyneel E., Bracke M., Di Gioia Y., Beckerle M.C., van Roy F., Kotelevets L. FASEB J. 23:916-928(2009) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH MAGI1 AND PTPN13, MUTAGENESIS OF THR-474, TISSUE SPECIFICITY, FUNCTION. |
| [20] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-92, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [21] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [22] | "Solution structure of the first and second LIM domain of thyroid receptor interacting protein 6 (TRIP6)." RIKEN structural genomics initiative (RSGI) Submitted (OCT-2006) to the PDB data bank Cited for: STRUCTURE BY NMR OF 279-396. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AJ001902 mRNA. Translation: CAA05080.1. AF000974 mRNA. Translation: AAB62222.1. AF093836, AF093834, AF093835 Genomic DNA. Translation: AAD03037.1. AF312032 Genomic DNA. Translation: AAK21007.1. AK291906 mRNA. Translation: BAF84595.1. CH236956 Genomic DNA. Translation: EAL23817.1. CH471091 Genomic DNA. Translation: EAW76472.1. BC002680 mRNA. Translation: AAH02680.1. BC004249 mRNA. Translation: AAH04249.1. BC004999 mRNA. Translation: AAH04999.1. BC021540 mRNA. Translation: AAH21540.1. BC028985 mRNA. Translation: AAH28985.1. L40374 mRNA. Translation: AAC41740.1. Frameshift. | ||||||||||||||||||
| IPI | IPI00301561. | ||||||||||||||||||
| RefSeq | NP_003293.2. NM_003302.2. | ||||||||||||||||||
| UniGene | Hs.534360. | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q15654. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | Q15654. 34 interactions. | ||||||||||||||||||
| MINT | MINT-1366827. | ||||||||||||||||||
| STRING | 9606.ENSP00000200457. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | Q15654. | ||||||||||||||||||
Polymorphism databases | |||||||||||||||||||
| DMDM | 20981729. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PaxDb | Q15654. | ||||||||||||||||||
| PeptideAtlas | Q15654. | ||||||||||||||||||
| PRIDE | Q15654. | ||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||
| DNASU | 7205. | ||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000200457; ENSP00000200457; ENSG00000087077. | ||||||||||||||||||
| GeneID | 7205. | ||||||||||||||||||
| KEGG | hsa:7205. | ||||||||||||||||||
| UCSC | uc003uww.3. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 7205. | ||||||||||||||||||
| GeneCards | GC07P100464. | ||||||||||||||||||
| H-InvDB | HIX0167828. | ||||||||||||||||||
| HGNC | HGNC:12311. TRIP6. | ||||||||||||||||||
| HPA | CAB046454. CAB046460. | ||||||||||||||||||
| MIM | 602933. gene. | ||||||||||||||||||
| neXtProt | NX_Q15654. | ||||||||||||||||||
| PharmGKB | PA36989. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | NOG279196. | ||||||||||||||||||
| HOVERGEN | HBG093602. | ||||||||||||||||||
| InParanoid | Q15654. | ||||||||||||||||||
| KO | K12792. | ||||||||||||||||||
| OrthoDB | EOG44J2J8. | ||||||||||||||||||
| PhylomeDB | Q15654. | ||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||
| Pathway_Interaction_DB | lysophospholipid_pathway. LPA receptor mediated events. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | Q15654. | ||||||||||||||||||
| Bgee | Q15654. | ||||||||||||||||||
| CleanEx | HS_TRIP6. | ||||||||||||||||||
| Genevestigator | Q15654. | ||||||||||||||||||
| GermOnline | ENSG00000087077. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| Gene3D | 2.10.110.10. 3 hits. | ||||||||||||||||||
| InterPro | IPR001781. Znf_LIM. [Graphical view] | ||||||||||||||||||
| Pfam | PF00412. LIM. 3 hits. [Graphical view] | ||||||||||||||||||
| SMART | SM00132. LIM. 3 hits. [Graphical view] | ||||||||||||||||||
| PROSITE | PS00478. LIM_DOMAIN_1. 2 hits. PS50023. LIM_DOMAIN_2. 3 hits. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other | |||||||||||||||||||
| ChiTaRS | TRIP6. human. | ||||||||||||||||||
| EvolutionaryTrace | Q15654. | ||||||||||||||||||
| GenomeRNAi | 7205. | ||||||||||||||||||
| NextBio | 28238. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | TRIP6_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q15654 Secondary accession number(s): A4D2E7 Q9UNT4 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 7 Human chromosome 7: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
