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Protein

Transcription initiation factor TFIID subunit 11

Gene

TAF11

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Core TAFII present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).

GO - Molecular functioni

  1. DNA binding Source: Ensembl
  2. protein N-terminus binding Source: UniProtKB
  3. thyroid hormone receptor binding Source: UniProtKB
  4. transcription coactivator activity Source: UniProtKB
  5. vitamin D receptor binding Source: UniProtKB

GO - Biological processi

  1. gene expression Source: Reactome
  2. positive regulation by host of viral transcription Source: UniProtKB
  3. regulation of transcription, DNA-templated Source: UniProtKB-KW
  4. transcription elongation from RNA polymerase II promoter Source: Reactome
  5. transcription from RNA polymerase II promoter Source: UniProtKB
  6. transcription initiation from RNA polymerase II promoter Source: UniProtKB
  7. viral process Source: Reactome
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Enzyme and pathway databases

ReactomeiREACT_1655. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_1851. RNA Polymerase II Transcription Initiation.
REACT_2089. RNA Polymerase II Promoter Escape.
REACT_22107. RNA Polymerase II Pre-transcription Events.
REACT_6233. Transcription of the HIV genome.
REACT_6253. RNA Polymerase II HIV Promoter Escape.
REACT_6332. HIV Transcription Initiation.
REACT_834. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 11
Alternative name(s):
TFIID subunit p30-beta
Transcription initiation factor TFIID 28 kDa subunit
Short name:
TAF(II)28
Short name:
TAFII-28
Short name:
TAFII28
Gene namesi
Name:TAF11
Synonyms:TAF2I
ORF Names:PRO2134
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 6

Organism-specific databases

HGNCiHGNC:11544. TAF11.

Subcellular locationi

GO - Cellular componenti

  1. Golgi apparatus Source: HPA
  2. nucleoplasm Source: HPA
  3. transcription factor TFIID complex Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36319.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 211211Transcription initiation factor TFIID subunit 11PRO_0000118902Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiQ15544.
PaxDbiQ15544.
PRIDEiQ15544.

PTM databases

PhosphoSiteiQ15544.

Expressioni

Gene expression databases

BgeeiQ15544.
CleanExiHS_TAF11.
GenevestigatoriQ15544.

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). Interacts with TAF13 both in vitro and intracellularly; also interacts directly with TBP.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
TAF13Q155432EBI-1027005,EBI-1026992

Protein-protein interaction databases

BioGridi112745. 23 interactions.
DIPiDIP-495N.
IntActiQ15544. 4 interactions.
MINTiMINT-141419.
STRINGi9606.ENSP00000354633.

Structurei

Secondary structure

1
211
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi115 – 12612Combined sources
Helixi131 – 14212Combined sources
Helixi148 – 17528Combined sources
Helixi184 – 19613Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BH8X-ray3.00B113-201[»]
1BH9X-ray2.60B113-201[»]
ProteinModelPortaliQ15544.
SMRiQ15544. Positions 113-201.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ15544.

Family & Domainsi

Domaini

TBP and TAFII18 bind to distinct domains of TAFII28.

Sequence similaritiesi

Belongs to the TAF11 family.Curated

Phylogenomic databases

eggNOGiCOG5251.
GeneTreeiENSGT00390000013228.
HOGENOMiHOG000006355.
HOVERGENiHBG079228.
InParanoidiQ15544.
KOiK03135.
OMAiMDDAHES.
OrthoDBiEOG7VDXQT.
PhylomeDBiQ15544.
TreeFamiTF315132.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view]
PANTHERiPTHR13218. PTHR13218. 1 hit.
PfamiPF04719. TAFII28. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q15544-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDDAHESPSD KGGETGESDE TAAVPGDPGA TDTDGIPEET DGDADVDLKE
60 70 80 90 100
AAAEEGELES QDVSDLTTVE REDSSLLNPA AKKLKIDTKE KKEKKQKVDE
110 120 130 140 150
DEIQKMQILV SSFSEEQLNR YEMYRRSAFP KAAIKRLIQS ITGTSVSQNV
160 170 180 190 200
VIAMSGISKV FVGEVVEEAL DVCEKWGEMP PLQPKHMREA VRRLKSKGQI
210
PNSKHKKIIF F
Length:211
Mass (Da):23,307
Last modified:November 1, 1996 - v1
Checksum:i77C7BDC667D19A8F
GO
Isoform 2 (identifier: Q15544-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     137-211: LIQSITGTSV...NSKHKKIIFF → HWMCVRSGEKCHHYNPNI

Note: No experimental confirmation available.

Show »
Length:154
Mass (Da):17,142
Checksum:i73B2AE01BABD971B
GO

Sequence cautioni

The sequence AAF22038.1 differs from that shown. Reason: Frameshift at position 208. Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti68 – 681T → R.1 Publication
Corresponds to variant rs15922 [ dbSNP | Ensembl ].
VAR_016333
Natural varianti155 – 1551S → F.
Corresponds to variant rs11537996 [ dbSNP | Ensembl ].
VAR_052261

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei137 – 21175LIQSI…KIIFF → HWMCVRSGEKCHHYNPNI in isoform 2. 1 PublicationVSP_044936Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83928 mRNA. Translation: CAA58780.1.
D63705 mRNA. Translation: BAA23620.1.
AK302226 mRNA. Translation: BAG63580.1.
AK313475 mRNA. Translation: BAG36260.1.
CR542068 mRNA. Translation: CAG46865.1.
BT019404 mRNA. Translation: AAV38211.1.
BT019405 mRNA. Translation: AAV38212.1.
AY217767 Genomic DNA. Translation: AAO25652.1.
AL033520 Genomic DNA. Translation: CAB96725.1.
BC021972 mRNA. Translation: AAH21972.1.
AF118094 mRNA. Translation: AAF22038.1. Sequence problems.
CCDSiCCDS4797.1. [Q15544-1]
CCDS59014.1. [Q15544-2]
PIRiJC4540.
RefSeqiNP_001257417.1. NM_001270488.1. [Q15544-2]
NP_005634.1. NM_005643.3. [Q15544-1]
UniGeneiHs.112444.

Genome annotation databases

EnsembliENST00000361288; ENSP00000354633; ENSG00000064995. [Q15544-1]
ENST00000420584; ENSP00000408121; ENSG00000064995. [Q15544-2]
GeneIDi6882.
KEGGihsa:6882.
UCSCiuc003ojw.2. human. [Q15544-1]
uc011dsr.2. human.

Polymorphism databases

DMDMi3024707.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Web resourcesi

NIEHS-SNPs

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X83928 mRNA. Translation: CAA58780.1.
D63705 mRNA. Translation: BAA23620.1.
AK302226 mRNA. Translation: BAG63580.1.
AK313475 mRNA. Translation: BAG36260.1.
CR542068 mRNA. Translation: CAG46865.1.
BT019404 mRNA. Translation: AAV38211.1.
BT019405 mRNA. Translation: AAV38212.1.
AY217767 Genomic DNA. Translation: AAO25652.1.
AL033520 Genomic DNA. Translation: CAB96725.1.
BC021972 mRNA. Translation: AAH21972.1.
AF118094 mRNA. Translation: AAF22038.1. Sequence problems.
CCDSiCCDS4797.1. [Q15544-1]
CCDS59014.1. [Q15544-2]
PIRiJC4540.
RefSeqiNP_001257417.1. NM_001270488.1. [Q15544-2]
NP_005634.1. NM_005643.3. [Q15544-1]
UniGeneiHs.112444.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1BH8X-ray3.00B113-201[»]
1BH9X-ray2.60B113-201[»]
ProteinModelPortaliQ15544.
SMRiQ15544. Positions 113-201.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi112745. 23 interactions.
DIPiDIP-495N.
IntActiQ15544. 4 interactions.
MINTiMINT-141419.
STRINGi9606.ENSP00000354633.

PTM databases

PhosphoSiteiQ15544.

Polymorphism databases

DMDMi3024707.

Proteomic databases

MaxQBiQ15544.
PaxDbiQ15544.
PRIDEiQ15544.

Protocols and materials databases

DNASUi6882.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000361288; ENSP00000354633; ENSG00000064995. [Q15544-1]
ENST00000420584; ENSP00000408121; ENSG00000064995. [Q15544-2]
GeneIDi6882.
KEGGihsa:6882.
UCSCiuc003ojw.2. human. [Q15544-1]
uc011dsr.2. human.

Organism-specific databases

CTDi6882.
GeneCardsiGC06M035734.
HGNCiHGNC:11544. TAF11.
MIMi600772. gene.
neXtProtiNX_Q15544.
PharmGKBiPA36319.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiCOG5251.
GeneTreeiENSGT00390000013228.
HOGENOMiHOG000006355.
HOVERGENiHBG079228.
InParanoidiQ15544.
KOiK03135.
OMAiMDDAHES.
OrthoDBiEOG7VDXQT.
PhylomeDBiQ15544.
TreeFamiTF315132.

Enzyme and pathway databases

ReactomeiREACT_1655. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_1851. RNA Polymerase II Transcription Initiation.
REACT_2089. RNA Polymerase II Promoter Escape.
REACT_22107. RNA Polymerase II Pre-transcription Events.
REACT_6233. Transcription of the HIV genome.
REACT_6253. RNA Polymerase II HIV Promoter Escape.
REACT_6332. HIV Transcription Initiation.
REACT_834. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Miscellaneous databases

EvolutionaryTraceiQ15544.
GeneWikiiTAF11.
GenomeRNAii6882.
NextBioi26887.
PROiQ15544.
SOURCEiSearch...

Gene expression databases

BgeeiQ15544.
CleanExiHS_TAF11.
GenevestigatoriQ15544.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR006809. TAFII28.
[Graphical view]
PANTHERiPTHR13218. PTHR13218. 1 hit.
PfamiPF04719. TAFII28. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterization of hTAFII18, hTAFII20 and hTAFII28: three subunits of the human transcription factor TFIID."
    Mengus G., May M., Jacq X., Staub A., Tora L., Chambon P., Davidson I.
    EMBO J. 14:1520-1531(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), PARTIAL PROTEIN SEQUENCE.
  2. "Isolation and characterization of a cDNA encoding a human TFIID subunit containing a variety of putative structural motifs including direct repeats."
    Kuzuhara T., Horikoshi M.
    Biol. Pharm. Bull. 19:122-126(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Subthalamic nucleus and Testis.
  4. "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)."
    Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S., Neubert P., Kstrang K., Schatten R., Shen B., Henze S., Mar W., Korn B., Zuo D., Hu Y., LaBaer J.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  5. "Cloning of human full-length CDSs in BD Creator(TM) system donor vector."
    Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A.
    Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  6. NIEHS SNPs program
    Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT ARG-68.
  7. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  8. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Lung.
  9. "Functional prediction of the coding sequences of 33 new genes deduced by analysis of cDNA clones from human fetal liver."
    Zhang C., Yu Y., Zhang S., Wei H., Zhou G., Bi J., Zhang Y., Liu M., He F.
    Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 50-211 (ISOFORM 1).
    Tissue: Fetal liver.
  10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic kidney.
  11. "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
    Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.
    Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  12. "Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family."
    Birck C., Poch O., Romier C., Ruff M., Mengus G., Lavigne A.C., Davidson I., Moras D.
    Cell 94:239-249(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 113-201 IN COMPLEX WITH TAF13.

Entry informationi

Entry nameiTAF11_HUMAN
AccessioniPrimary (citable) accession number: Q15544
Secondary accession number(s): B2R8R3, B4DY18, Q9UHS0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: March 4, 2015
This is version 147 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.