Q15413 (RYR3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 131.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ryanodine receptor 3 Short name=RYR-3 Short name=RyR3 Alternative name(s): Brain ryanodine receptor-calcium release channel Brain-type ryanodine receptor Type 3 ryanodine receptor | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 4870 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Calcium channel that mediates the release of Ca2+ from the sarcoplasmic reticulum into the cytoplasm in muscle and thereby plays a role in triggering muscle contraction. May regulate Ca2+ release by other calcium channels. Calcium channel that mediates Ca2+-induced Ca2+ release from the endoplasmic reticulum in non-muscle cells. Contributes to cellular calcium ion homeostasis By similarity. Plays a role in cellular calcium signaling. Ref.8 |
| Subunit structure | Homotetramer. Heterotetramer with RYR2. Interacts with CALM By similarity. Interacts with FKBP1A. Ref.9 |
| Subcellular location | Sarcoplasmic reticulum membrane; Multi-pass membrane protein Probable. Membrane; Multi-pass membrane protein Probable. Microsome membrane; Multi-pass membrane protein By similarity. Note: The number of predicted transmembrane domains varies between orthologs, but both N-terminus and C-terminus seem to be cytoplasmic By similarity. |
| Tissue specificity | Brain, skeletal muscle, placenta and possibly liver and kidney. In brain, highest levels are found in the cerebellum, hippocampus, caudate nucleus and amygdala, with lower levels in the corpus callosum, substantia nigra and thalamus. Ref.1 Ref.4 |
| Domain | The calcium release channel activity resides in the C-terminal region while the remaining part of the protein resides in the cytoplasm Probable. |
| Miscellaneous | Channel activity is modulated by the alkaloid ryanodine that binds to the open calcium-release channel with high affinity. At low concentrations, ryanodine maintains the channel in an open conformation. High ryanodine concentrations inhibit channel activity. Channel activity is regulated by calmodulin (CALM). The calcium release is activated by elevated cytoplasmic calcium levels in the micromolar range, by caffeine and adenine nucleotides, such as AMP and ATP. Inhibited by Mg2+ and ruthenium red By similarity. |
| Sequence similarities | Belongs to the ryanodine receptor (TC 1.A.3.1) family. RYR3 subfamily. [View classification] Contains 3 B30.2/SPRY domains. Contains 5 MIR domains. |
| Sequence caution | The sequence BAA23795.1 differs from that shown. Reason: Frameshift at positions 742 and 766. |
Ontologies
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q15413-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q15413-2) The sequence of this isoform differs from the canonical sequence as follows: 3337-3341: Missing. | ||||||
| Isoform 3 (identifier: Q15413-3) The sequence of this isoform differs from the canonical sequence as follows: 3857-3859: DSS → GMW 3860-4870: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 4870 | 4870 | Ryanodine receptor 3 | PRO_0000219363 | |||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||
| Topological domain | 1 – 4186 | 4186 | Cytoplasmic By similarity | ||||||||||||||||||||||||||||
| Transmembrane | 4187 – 4207 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Transmembrane | 4410 – 4430 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Transmembrane | 4485 – 4505 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Transmembrane | 4610 – 4630 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Transmembrane | 4633 – 4653 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Transmembrane | 4672 – 4692 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Intramembrane | 4723 – 4732 | 10 | Pore-forming; By similarity | ||||||||||||||||||||||||||||
| Transmembrane | 4753 – 4773 | 21 | Helical; Potential | ||||||||||||||||||||||||||||
| Topological domain | 4774 – 4870 | 97 | Cytoplasmic By similarity | ||||||||||||||||||||||||||||
| Domain | 100 – 155 | 56 | MIR 1 | ||||||||||||||||||||||||||||
| Domain | 162 – 207 | 46 | MIR 2 | ||||||||||||||||||||||||||||
| Domain | 215 – 269 | 55 | MIR 3 | ||||||||||||||||||||||||||||
| Domain | 275 – 333 | 59 | MIR 4 | ||||||||||||||||||||||||||||
| Domain | 343 – 400 | 58 | MIR 5 | ||||||||||||||||||||||||||||
| Domain | 585 – 796 | 212 | B30.2/SPRY 1 | ||||||||||||||||||||||||||||
| Repeat | 840 – 953 | 114 | 1 | ||||||||||||||||||||||||||||
| Repeat | 954 – 1068 | 115 | 2 | ||||||||||||||||||||||||||||
| Domain | 1012 – 1208 | 197 | B30.2/SPRY 2 | ||||||||||||||||||||||||||||
| Domain | 1254 – 1466 | 213 | B30.2/SPRY 3 | ||||||||||||||||||||||||||||
| Repeat | 2589 – 2707 | 119 | 3 | ||||||||||||||||||||||||||||
| Repeat | 2708 – 2820 | 113 | 4 | ||||||||||||||||||||||||||||
| Region | 840 – 2820 | 1981 | 4 X approximate repeats | ||||||||||||||||||||||||||||
| Region | 2322 – 2335 | 14 | Interaction with FKBP1A | ||||||||||||||||||||||||||||
| Region | 3469 – 3498 | 30 | Interaction with CALM By similarity | ||||||||||||||||||||||||||||
Sites | |||||||||||||||||||||||||||||||
| Site | 3883 | 1 | Important for activation by Ca(2+) By similarity | ||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||
| Alternative sequence | 3337 – 3341 | 5 | Missing in isoform 2. | VSP_005954 | |||||||||||||||||||||||||||
| Alternative sequence | 3857 – 3859 | 3 | DSS → GMW in isoform 3. | VSP_005955 | |||||||||||||||||||||||||||
| Alternative sequence | 3860 – 4870 | 1011 | Missing in isoform 3. | VSP_005956 | |||||||||||||||||||||||||||
| Natural variant | 261 | 1 | R → S. Ref.2 | VAR_024077 | |||||||||||||||||||||||||||
| Natural variant | 358 | 1 | I → T. Corresponds to variant rs2304380 [ dbSNP | Ensembl ]. | VAR_057166 | |||||||||||||||||||||||||||
| Natural variant | 494 | 1 | V → I. Ref.2 | VAR_024078 | |||||||||||||||||||||||||||
| Natural variant | 693 | 1 | Y → C. Ref.2 | VAR_011404 | |||||||||||||||||||||||||||
| Natural variant | 731 | 1 | I → V. Ref.2 | VAR_011405 | |||||||||||||||||||||||||||
| Natural variant | 1380 | 1 | E → G. Ref.2 | VAR_011406 | |||||||||||||||||||||||||||
| Natural variant | 2268 | 1 | Missing. Ref.2 | VAR_011407 | |||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||
| Sequence conflict | 932 | 1 | A → T in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 1081 | 1 | A → P in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 1336 | 1 | A → G in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 1480 | 1 | K → E in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 1641 | 1 | R → C in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 1641 | 1 | R → C in CAA04798. Ref.2 | ||||||||||||||||||||||||||||
| Sequence conflict | 2270 | 1 | G → E in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 2270 | 1 | G → E in CAA04798. Ref.2 | ||||||||||||||||||||||||||||
| Sequence conflict | 2355 | 1 | A → G in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 2433 | 1 | A → G in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 2546 | 1 | F → I in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 2580 | 1 | T → S in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 2817 | 1 | A → G in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 3684 | 1 | S → P in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 3698 | 1 | F → S in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 4026 | 1 | E → G in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 4083 | 1 | E → G in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 4537 | 1 | R → P in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 4604 | 1 | I → L in BAA23795. Ref.1 | ||||||||||||||||||||||||||||
| Sequence conflict | 4709 | 1 | C → R in CAA52326. Ref.6 | ||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||
| Helix | 2612 – 2635 | 24 | |||||||||||||||||||||||||||||
| Turn | 2646 – 2649 | 4 | |||||||||||||||||||||||||||||
| Helix | 2657 – 2659 | 3 | |||||||||||||||||||||||||||||
| Helix | 2662 – 2681 | 20 | |||||||||||||||||||||||||||||
| Beta strand | 2685 – 2688 | 4 | |||||||||||||||||||||||||||||
| Helix | 2695 – 2704 | 10 | |||||||||||||||||||||||||||||
| Helix | 2723 – 2725 | 3 | |||||||||||||||||||||||||||||
| Helix | 2730 – 2757 | 28 | |||||||||||||||||||||||||||||
| Helix | 2769 – 2771 | 3 | |||||||||||||||||||||||||||||
| Helix | 2774 – 2792 | 19 | |||||||||||||||||||||||||||||
| Turn | 2793 – 2795 | 3 | |||||||||||||||||||||||||||||
| Beta strand | 2796 – 2799 | 4 | |||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular cloning and characterization of a human brain ryanodine receptor." Nakashima Y., Nishimura S., Maeda A., Barsoumian E.L., Hakamata Y., Nakai J., Allen P.D., Imoto K., Kita T. FEBS Lett. 417:157-162(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), TISSUE SPECIFICITY. Tissue: Brain. |
| [2] | "cDNA cloning and sequencing of the human ryanodine receptor type 3 (RYR3) reveals a novel alternative splice site in the RYR3 gene." Leeb T., Brenig B. FEBS Lett. 423:367-370(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), ALTERNATIVE SPLICING, VARIANTS SER-261; ILE-494; CYS-693; VAL-731; GLY-1380 AND SER-2268 DEL. Tissue: Fetal brain. |
| [3] | "Analysis of the DNA sequence and duplication history of human chromosome 15." Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A. Nusbaum C.Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "Partial cloning and differential expression of ryanodine receptor/calcium-release channel genes in human tissues including the hippocampus and cerebellum." Martin C., Chapman K.E., Seckl J.R., Ashley R.H. Neuroscience 85:205-216(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 520-660, TISSUE SPECIFICITY. Tissue: Skeletal muscle. |
| [5] | "Involvement of the brain type of ryanodine receptor in T-cell proliferation." Hakamata Y., Nishimura S., Nakai J., Nakashima Y., Kita T., Imoto K. FEBS Lett. 352:206-210(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 3943-4870. Tissue: T-cell. |
| [6] | "Localization of a novel ryanodine receptor gene (RYR3) to human chromosome 15q14-q15 by in situ hybridization." Sorrentino V., Giannini G., Malzac P., Mattei M.-G. Genomics 18:163-165(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] OF 4644-4842. Tissue: Cervix carcinoma and Hepatoma. |
| [7] | "Isolation and partial cloning of ryanodine-sensitive Ca2+ release channel protein isoforms from human myometrial smooth muscle." Lynn S., Morgan J.M., Lamb H.K., Meissner G., Gillespie J.I. FEBS Lett. 372:6-12(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 4652-4803. Tissue: Myometrium. |
| [8] | "Knock-down of the type 3 ryanodine receptor impairs sustained Ca2+ signaling via the T cell receptor/CD3 complex." Schwarzmann N., Kunerth S., Weber K., Mayr G.W., Guse A.H. J. Biol. Chem. 277:50636-50642(2002) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [9] | "Characterization of the binding sites for the interactions between FKBP12 and intracellular calcium release channels." Wen H., Kang S., Song Y., Song Y., Yang H.J., Kim M.H., Park S. Arch. Biochem. Biophys. 517:37-42(2012) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH FKBP1A. |
| + | Additional computationally mapped references. |
Web resources
| Wikipedia Ryanodine receptor entry |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AB001025 mRNA. Translation: BAA23795.1. Frameshift. AJ001515 mRNA. Translation: CAA04798.1. AC010809 Genomic DNA. No translation available. AC011938 Genomic DNA. No translation available. AC055874 Genomic DNA. No translation available. AC067793 Genomic DNA. No translation available. AC087638 Genomic DNA. No translation available. AJ002512 mRNA. Translation: CAA05503.1. X74269 mRNA. Translation: CAA52326.1. X74270 Genomic DNA. Translation: CAA52327.1. | ||||||||||||
| IPI | IPI00217188. IPI00329784. IPI00893362. | ||||||||||||
| PIR | S37537. S66631. | ||||||||||||
| RefSeq | NP_001027.3. NM_001036.3. NP_001230925.1. NM_001243996.1. | ||||||||||||
| UniGene | Hs.709373. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q15413. | ||||||||||||
| SMR | Q15413. Positions 13-530, 2598-2800, 3469-3495. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q15413. 2 interactions. | ||||||||||||
| STRING | 9606.ENSP00000373884. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q15413. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 18202506. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q15413. | ||||||||||||
| PRIDE | Q15413. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000389232; ENSP00000373884; ENSG00000198838. ENST00000415757; ENSP00000399610; ENSG00000198838. | ||||||||||||
| GeneID | 6263. | ||||||||||||
| KEGG | hsa:6263. | ||||||||||||
| UCSC | uc001zhi.3. human. uc010bar.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 6263. | ||||||||||||
| GeneCards | GC15P033603. | ||||||||||||
| H-InvDB | HIX0038065. | ||||||||||||
| HGNC | HGNC:10485. RYR3. | ||||||||||||
| HPA | CAB006887. | ||||||||||||
| MIM | 180903. gene. | ||||||||||||
| neXtProt | NX_Q15413. | ||||||||||||
| PharmGKB | PA34897. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG247670. | ||||||||||||
| HOGENOM | HOG000231428. | ||||||||||||
| HOVERGEN | HBG006699. | ||||||||||||
| InParanoid | Q15413. | ||||||||||||
| KO | K04963. | ||||||||||||
| OMA | HSRTQIK. | ||||||||||||
| OrthoDB | EOG4548XN. | ||||||||||||
Gene expression databases | |||||||||||||
| Bgee | Q15413. | ||||||||||||
| CleanEx | HS_RYR3. | ||||||||||||
| Genevestigator | Q15413. | ||||||||||||
| GermOnline | ENSG00000198838. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.10.238.10. 1 hit. | ||||||||||||
| InterPro | IPR001870. B30.2/SPRY. IPR000699. Ca-rel_channel. IPR008985. ConA-like_lec_gl_sf. IPR011992. EF-hand-like_dom. IPR002048. EF_hand_dom. IPR014821. Ins145_P3_rcpt. IPR005821. Ion_trans_dom. IPR016093. MIR_motif. IPR013662. RIH_assoc-dom. IPR013333. Ryan_recept. IPR003032. Ryanodine_rcpt. IPR015925. Ryanodine_recept-rel. IPR009460. Ryanrecept_TM4-6. IPR018355. SPla/RYanodine_receptor_subgr. IPR003877. SPRY_rcpt. [Graphical view] | ||||||||||||
| PANTHER | PTHR13715. PTHR13715. 1 hit. | ||||||||||||
| Pfam | PF08709. Ins145_P3_rec. 1 hit. PF00520. Ion_trans. 1 hit. PF02815. MIR. 1 hit. PF08454. RIH_assoc. 1 hit. PF06459. RR_TM4-6. 1 hit. PF01365. RYDR_ITPR. 2 hits. PF02026. RyR. 4 hits. PF00622. SPRY. 3 hits. [Graphical view] | ||||||||||||
| PRINTS | PR00795. RYANODINER. | ||||||||||||
| SMART | SM00472. MIR. 4 hits. SM00449. SPRY. 3 hits. [Graphical view] | ||||||||||||
| SUPFAM | SSF49899. ConA_like_lec_gl. 3 hits. SSF82109. MIR. 1 hit. | ||||||||||||
| PROSITE | PS50188. B302_SPRY. 3 hits. PS50919. MIR. 5 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| BindingDB | Q15413. | ||||||||||||
| ChEMBL | CHEMBL2062. | ||||||||||||
| GenomeRNAi | 6263. | ||||||||||||
| NextBio | 24329. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | RYR3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q15413 Secondary accession number(s): O15175, Q15412 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 15 Human chromosome 15: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
