Q15286 (RAB35_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 124.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ras-related protein Rab-35 Alternative name(s): GTP-binding protein RAY Ras-related protein Rab-1C | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 201 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge. Ref.9 |
| Subunit structure | Interacts with DENND1A and DENND1B in a nucleotide-dependent manner. The low binding to DENND1C is nucleotide-independent. All 3 DENND1 act as GEFs for RAB35 and thus activate the protein. Ref.11 Ref.13 Ref.14 |
| Subcellular location | Cell membrane; Lipid-anchor; Cytoplasmic side Potential. Membrane › clathrin-coated pit. Cytoplasmic vesicle › clathrin-coated vesicle. Endosome. Melanosome. Note: Present on sorting endosomes and endosomal tubules. Tends to be enriched in PIP2-positive cell membrane domains. During mitosis, associated with the plasma membrane and present at the ingressing furrow during early cytokinesis as well as at the intercellular bridge later during cytokinesis. Identified by mass spectrometry in melanosome fractions from stage I to stage IV. Ref.9 Ref.10 |
| Post-translational modification | AMPylation at Tyr-77 by L.pneumophila DrrA occurs in the switch 2 region and leads to moderate inactivation of the GTPase activity. It appears to prolong the lifetime of the GTP state of RAB1B by restricting access of GTPase effectors to switch 2 and blocking effector-stimulated GTP hydrolysis, thereby rendering RAB35 constitutively active. Phosphocholinated by L.pneumophila AnkX. Both GDP-bound and GTP-bound forms can be phosphocholinated. Phosphocholination inhibits the GEF activity of DENND1A. |
| Sequence similarities | Belongs to the small GTPase superfamily. Rab family. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q15286-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q15286-2) The sequence of this isoform differs from the canonical sequence as follows: 118-201: VGNKNDDPER...KNSKRKKRCC → DVQLHHGAGPPSKERQPGKTAAATTERCGEAHEEQ | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 201 | 201 | Ras-related protein Rab-35 | PRO_0000121245 | ||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||
| Nucleotide binding | 15 – 22 | 8 | GTP By similarity | |||||||||||||||||||||||||||||||||||
| Nucleotide binding | 63 – 67 | 5 | GTP By similarity | |||||||||||||||||||||||||||||||||||
| Nucleotide binding | 120 – 123 | 4 | GTP By similarity | |||||||||||||||||||||||||||||||||||
| Motif | 37 – 45 | 9 | Effector region By similarity | |||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||
| Modified residue | 75 | 1 | O-(2-cholinephosphoryl)serine; by Legionella AnkX Probable | |||||||||||||||||||||||||||||||||||
| Modified residue | 77 | 1 | O-AMP-tyrosine; by Legionella DrrA Probable | |||||||||||||||||||||||||||||||||||
| Lipidation | 200 | 1 | S-geranylgeranyl cysteine By similarity | |||||||||||||||||||||||||||||||||||
| Lipidation | 201 | 1 | S-geranylgeranyl cysteine By similarity | |||||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 118 – 201 | 84 | VGNKN…KKRCC → DVQLHHGAGPPSKERQPGKT AAATTERCGEAHEEQ in isoform 2. | VSP_042918 | ||||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 22 | 1 | S → N: Destabilization of the intercellular bridge during cytokinesis. Strong reduction in fast recycling. Ref.9 | |||||||||||||||||||||||||||||||||||
| Mutagenesis | 67 | 1 | Q → L: Loss of GTPase activity. Increased fast recycling. Ref.9 | |||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||
| Beta strand | 7 – 14 | 8 | ||||||||||||||||||||||||||||||||||||
| Helix | 21 – 28 | 8 | ||||||||||||||||||||||||||||||||||||
| Turn | 38 – 40 | 3 | ||||||||||||||||||||||||||||||||||||
| Beta strand | 41 – 52 | 12 | ||||||||||||||||||||||||||||||||||||
| Beta strand | 55 – 64 | 10 | ||||||||||||||||||||||||||||||||||||
| Helix | 67 – 69 | 3 | ||||||||||||||||||||||||||||||||||||
| Helix | 75 – 78 | 4 | ||||||||||||||||||||||||||||||||||||
| Beta strand | 82 – 89 | 8 | ||||||||||||||||||||||||||||||||||||
| Helix | 93 – 109 | 17 | ||||||||||||||||||||||||||||||||||||
| Beta strand | 113 – 120 | 8 | ||||||||||||||||||||||||||||||||||||
| Helix | 125 – 127 | 3 | ||||||||||||||||||||||||||||||||||||
| Helix | 132 – 142 | 11 | ||||||||||||||||||||||||||||||||||||
| Beta strand | 146 – 148 | 3 | ||||||||||||||||||||||||||||||||||||
| Turn | 151 – 154 | 4 | ||||||||||||||||||||||||||||||||||||
| Helix | 157 – 175 | 19 | ||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular cloning of two small GTP-binding proteins from human skeletal muscle." Zhu A.X., Zhao Y., Flier J.S. Biochem. Biophys. Res. Commun. 205:1875-1882(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Muscle. |
| [2] | "cDNA clones of human proteins involved in signal transduction sequenced by the Guthrie cDNA resource center (www.cdna.org)." Puhl H.L. III, Ikeda S.R., Aronstam R.S. Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [3] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [4] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S., Neubert P., Kstrang K., Schatten R., Shen B., Henze S., Mar W., Korn B., Zuo D., Hu Y., LaBaer J. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). Tissue: Tongue and Uterus. |
| [6] | "The finished DNA sequence of human chromosome 12." Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R. Gibbs R.A.Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Uterus. |
| [9] | "Rab35 regulates an endocytic recycling pathway essential for the terminal steps of cytokinesis." Kouranti I., Sachse M., Arouche N., Goud B., Echard A. Curr. Biol. 16:1719-1725(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, MUTAGENESIS OF SER-22 AND GLN-67. |
| [10] | "Proteomic and bioinformatic characterization of the biogenesis and function of melanosomes." Chi A., Valencia J.C., Hu Z.-Z., Watabe H., Yamaguchi H., Mangini N.J., Huang H., Canfield V.A., Cheng K.C., Yang F., Abe R., Yamagishi S., Shabanowitz J., Hearing V.J., Wu C., Appella E., Hunt D.F. J. Proteome Res. 5:3135-3144(2006) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. Tissue: Melanoma. |
| [11] | "The connecdenn family, Rab35 guanine nucleotide exchange factors interfacing with the clathrin machinery." Marat A.L., McPherson P.S. J. Biol. Chem. 285:10627-10637(2010) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH DENND1A; DENND1B AND DENND1C. |
| [12] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [13] | "Modulation of Rab GTPase function by a protein phosphocholine transferase." Mukherjee S., Liu X., Arasaki K., McDonough J., Galan J.E., Roy C.R. Nature 477:103-106(2011) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH L.PNEUMOPHILA ANKX AND DRRA, AMPYLATION AT TYR-77, CHOLINEPHOSPHORYLATION AT SER-75. |
| [14] | "Reversible phosphocholination of Rab proteins by Legionella pneumophila effector proteins." Goody P.R., Heller K., Oesterlin L.K., Muller M.P., Itzen A., Goody R.S. EMBO J. 31:1774-1784(2012) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH L.PNEUMOPHILA ANKX AND DRRA, AMPYLATION, CHOLINEPHOSPHORYLATION. |
| [15] | "Insights regarding guanine nucleotide exchange from the structure of a DENN-domain protein complexed with its Rab GTPase substrate." Wu X., Bradley M.J., Cai Y., Kummel D., De La Cruz E.M., Barr F.A., Reinisch K.M. Proc. Natl. Acad. Sci. U.S.A. 108:18672-18677(2011) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 1-180 IN COMPLEX WITH DENND1B. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X79781 mRNA. Translation: CAA56177.1. AF498960 mRNA. Translation: AAM21108.1. BT020024 mRNA. Translation: AAV38827.1. CR536486 mRNA. Translation: CAG38725.1. CR541683 mRNA. Translation: CAG46484.1. AK304620 mRNA. Translation: BAG65402.1. AK312538 mRNA. Translation: BAG35437.1. AC004812 Genomic DNA. Translation: AAC83182.1. CH471054 Genomic DNA. Translation: EAW98163.1. CH471054 Genomic DNA. Translation: EAW98164.1. BC015931 mRNA. Translation: AAH15931.1. | ||||||||||||
| IPI | IPI00300096. IPI00953892. | ||||||||||||
| PIR | JC2488. | ||||||||||||
| RefSeq | NP_001161078.1. NM_001167606.1. NP_006852.1. NM_006861.6. | ||||||||||||
| UniGene | Hs.524788. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q15286. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q15286. 10 interactions. | ||||||||||||
| MINT | MINT-1370578. | ||||||||||||
| STRING | 9606.ENSP00000229340. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q15286. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 3024525. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q15286. | ||||||||||||
| PRIDE | Q15286. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 11021. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000229340; ENSP00000229340; ENSG00000111737. ENST00000534951; ENSP00000441883; ENSG00000111737. | ||||||||||||
| GeneID | 11021. | ||||||||||||
| KEGG | hsa:11021. | ||||||||||||
| UCSC | uc001txm.2. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 11021. | ||||||||||||
| GeneCards | GC12M120532. | ||||||||||||
| HGNC | HGNC:9774. RAB35. | ||||||||||||
| HPA | HPA054146. | ||||||||||||
| MIM | 604199. gene. | ||||||||||||
| neXtProt | NX_Q15286. | ||||||||||||
| PharmGKB | PA34127. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG1100. | ||||||||||||
| HOGENOM | HOG000233968. | ||||||||||||
| HOVERGEN | HBG009351. | ||||||||||||
| InParanoid | Q15286. | ||||||||||||
| KO | K07876. | ||||||||||||
| OMA | NCDVVNR. | ||||||||||||
| OrthoDB | EOG4QVCD5. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q15286. | ||||||||||||
| Bgee | Q15286. | ||||||||||||
| CleanEx | HS_RAB35. | ||||||||||||
| Genevestigator | Q15286. | ||||||||||||
| GermOnline | ENSG00000111737. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR005225. Small_GTP-bd_dom. IPR001806. Small_GTPase. IPR003579. Small_GTPase_Rab_type. [Graphical view] | ||||||||||||
| Pfam | PF00071. Ras. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00449. RASTRNSFRMNG. | ||||||||||||
| SMART | SM00175. RAB. 1 hit. [Graphical view] | ||||||||||||
| TIGRFAMs | TIGR00231. small_GTP. 1 hit. | ||||||||||||
| PROSITE | PS51419. RAB. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| GenomeRNAi | 11021. | ||||||||||||
| NextBio | 41874. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | RAB35_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q15286 Secondary accession number(s): B2R6E0, B4E390 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 12 Human chromosome 12: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
