ID JOS1_HUMAN Reviewed; 202 AA. AC Q15040; A8K712; DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1996, sequence version 1. DT 24-JAN-2024, entry version 170. DE RecName: Full=Josephin-1; DE EC=3.4.19.12; DE AltName: Full=Josephin domain-containing protein 1; GN Name=JOSD1; Synonyms=JSPH1, KIAA0063; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Bone marrow; RX PubMed=7584044; DOI=10.1093/dnares/1.5.223; RA Nomura N., Nagase T., Miyajima N., Sazuka T., Tanaka A., Sato S., Seki N., RA Kawarabayasi Y., Ishikawa K., Tabata S.; RT "Prediction of the coding sequences of unidentified human genes. II. The RT coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of RT cDNA clones from human cell line KG-1."; RL DNA Res. 1:223-229(1994). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=15461802; DOI=10.1186/gb-2004-5-10-r84; RA Collins J.E., Wright C.L., Edwards C.A., Davis M.P., Grinham J.A., RA Cole C.G., Goward M.E., Aguado B., Mallya M., Mokrab Y., Huckle E.J., RA Beare D.M., Dunham I.; RT "A genome annotation-driven approach to cloning the human ORFeome."; RL Genome Biol. 5:R84.1-R84.11(2004). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=10591208; DOI=10.1038/990031; RA Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., RA Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., RA Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., RA Bridgeman A.M., Buck D., Burgess J., Burrill W.D., Burton J., Carder C., RA Carter N.P., Chen Y., Clark G., Clegg S.M., Cobley V.E., Cole C.G., RA Collier R.E., Connor R., Conroy D., Corby N.R., Coville G.J., Cox A.V., RA Davis J., Dawson E., Dhami P.D., Dockree C., Dodsworth S.J., Durbin R.M., RA Ellington A.G., Evans K.L., Fey J.M., Fleming K., French L., Garner A.A., RA Gilbert J.G.R., Goward M.E., Grafham D.V., Griffiths M.N.D., Hall C., RA Hall R.E., Hall-Tamlyn G., Heathcott R.W., Ho S., Holmes S., Hunt S.E., RA Jones M.C., Kershaw J., Kimberley A.M., King A., Laird G.K., Langford C.F., RA Leversha M.A., Lloyd C., Lloyd D.M., Martyn I.D., Mashreghi-Mohammadi M., RA Matthews L.H., Mccann O.T., Mcclay J., Mclaren S., McMurray A.A., RA Milne S.A., Mortimore B.J., Odell C.N., Pavitt R., Pearce A.V., Pearson D., RA Phillimore B.J.C.T., Phillips S.H., Plumb R.W., Ramsay H., Ramsey Y., RA Rogers L., Ross M.T., Scott C.E., Sehra H.K., Skuce C.D., Smalley S., RA Smith M.L., Soderlund C., Spragon L., Steward C.A., Sulston J.E., RA Swann R.M., Vaudin M., Wall M., Wallis J.M., Whiteley M.N., Willey D.L., RA Williams L., Williams S.A., Williamson H., Wilmer T.E., Wilming L., RA Wright C.L., Hubbard T., Bentley D.R., Beck S., Rogers J., Shimizu N., RA Minoshima S., Kawasaki K., Sasaki T., Asakawa S., Kudoh J., Shintani A., RA Shibuya K., Yoshizaki Y., Aoki N., Mitsuyama S., Roe B.A., Chen F., Chu L., RA Crabtree J., Deschamps S., Do A., Do T., Dorman A., Fang F., Fu Y., Hu P., RA Hua A., Kenton S., Lai H., Lao H.I., Lewis J., Lewis S., Lin S.-P., Loh P., RA Malaj E., Nguyen T., Pan H., Phan S., Qi S., Qian Y., Ray L., Ren Q., RA Shaull S., Sloan D., Song L., Wang Q., Wang Y., Wang Z., White J., RA Willingham D., Wu H., Yao Z., Zhan M., Zhang G., Chissoe S., Murray J., RA Miller N., Minx P., Fulton R., Johnson D., Bemis G., Bentley D., RA Bradshaw H., Bourne S., Cordes M., Du Z., Fulton L., Goela D., Graves T., RA Hawkins J., Hinds K., Kemp K., Latreille P., Layman D., Ozersky P., RA Rohlfing T., Scheet P., Walker C., Wamsley A., Wohldmann P., Pepin K., RA Nelson J., Korf I., Bedell J.A., Hillier L.W., Mardis E., Waterston R., RA Wilson R., Emanuel B.S., Shaikh T., Kurahashi H., Saitta S., Budarf M.L., RA McDermid H.E., Johnson A., Wong A.C.C., Morrow B.E., Edelmann L., Kim U.J., RA Shizuya H., Simon M.I., Dumanski J.P., Peyrard M., Kedra D., Seroussi E., RA Fransson I., Tapia I., Bruder C.E., O'Brien K.P., Wilkinson P., RA Bodenteich A., Hartman K., Hu X., Khan A.S., Lane L., Tilahun Y., RA Wright H.; RT "The DNA sequence of human chromosome 22."; RL Nature 402:489-495(1999). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Skin; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [7] RP CATALYTIC ACTIVITY. RX PubMed=17696782; DOI=10.1515/bc.2007.107; RA Tzvetkov N., Breuer P.; RT "Josephin domain-containing proteins from a variety of species are active RT de-ubiquitination enzymes."; RL Biol. Chem. 388:973-978(2007). RN [8] RP CATALYTIC ACTIVITY, AND FUNCTION. RX PubMed=21118805; DOI=10.1074/jbc.m110.177360; RA Weeks S.D., Grasty K.C., Hernandez-Cuebas L., Loll P.J.; RT "Crystal structure of a Josephin-ubiquitin complex: evolutionary restraints RT on ataxin-3 deubiquitinating activity."; RL J. Biol. Chem. 286:4555-4565(2011). RN [9] RP FUNCTION, INTERACTION WITH ACTB, SUBCELLULAR LOCATION, AND MUTAGENESIS OF RP CYS-36. RX PubMed=23625928; DOI=10.1074/jbc.m113.463406; RA Seki T., Gong L., Williams A.J., Sakai N., Todi S.V., Paulson H.L.; RT "JosD1, a membrane-targeted deubiquitinating enzyme, is activated by RT ubiquitination and regulates membrane dynamics, cell motility, and RT endocytosis."; RL J. Biol. Chem. 288:17145-17155(2013). RN [10] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-15, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [11] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver; RX PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014; RA Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., RA Ye M., Zou H.; RT "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver RT phosphoproteome."; RL J. Proteomics 96:253-262(2014). RN [12] RP 3D-STRUCTURE MODELING. RX PubMed=12486728; DOI=10.1002/prot.10280; RA Albrecht M., Hoffmann D., Evert B.O., Schmitt I., Wuellner U., Lengauer T.; RT "Structural modeling of ataxin-3 reveals distant homology to adaptins."; RL Proteins 50:355-370(2003). CC -!- FUNCTION: Deubiquitinates monoubiquitinated probes (in vitro). When CC ubiquitinated, cleaves 'Lys-63'-linked and 'Lys-48'-linked poly- CC ubiquitin chains (in vitro), hence may act as a deubiquitinating CC enzyme. May increase macropinocytosis and suppress clathrin- and CC caveolae-mediated endocytosis. May enhance membrane dynamics and cell CC motility independently of its catalytic activity. CC {ECO:0000269|PubMed:21118805, ECO:0000269|PubMed:23625928}. CC -!- CATALYTIC ACTIVITY: CC Reaction=Thiol-dependent hydrolysis of ester, thioester, amide, peptide CC and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76- CC residue protein attached to proteins as an intracellular targeting CC signal).; EC=3.4.19.12; Evidence={ECO:0000269|PubMed:17696782, CC ECO:0000269|PubMed:21118805}; CC -!- SUBUNIT: Interacts with beta-actin/ACTB. {ECO:0000269|PubMed:23625928}. CC -!- INTERACTION: CC Q15040; Q6UY14-3: ADAMTSL4; NbExp=3; IntAct=EBI-2510602, EBI-10173507; CC Q15040; Q9BWT7: CARD10; NbExp=3; IntAct=EBI-2510602, EBI-3866279; CC Q15040; A8MQ03: CYSRT1; NbExp=3; IntAct=EBI-2510602, EBI-3867333; CC Q15040; P98095: FBLN2; NbExp=3; IntAct=EBI-2510602, EBI-947973; CC Q15040; Q7Z3Y8: KRT27; NbExp=3; IntAct=EBI-2510602, EBI-3044087; CC Q15040; Q15323: KRT31; NbExp=3; IntAct=EBI-2510602, EBI-948001; CC Q15040; O76011: KRT34; NbExp=3; IntAct=EBI-2510602, EBI-1047093; CC Q15040; Q6A162: KRT40; NbExp=6; IntAct=EBI-2510602, EBI-10171697; CC Q15040; O43790: KRT86; NbExp=3; IntAct=EBI-2510602, EBI-9996498; CC Q15040; Q07627: KRTAP1-1; NbExp=3; IntAct=EBI-2510602, EBI-11959885; CC Q15040; Q8IUG1: KRTAP1-3; NbExp=3; IntAct=EBI-2510602, EBI-11749135; CC Q15040; P60372: KRTAP10-4; NbExp=3; IntAct=EBI-2510602, EBI-10178153; CC Q15040; P60410: KRTAP10-8; NbExp=6; IntAct=EBI-2510602, EBI-10171774; CC Q15040; P60328: KRTAP12-3; NbExp=3; IntAct=EBI-2510602, EBI-11953334; CC Q15040; Q9BYR9: KRTAP2-4; NbExp=3; IntAct=EBI-2510602, EBI-14065470; CC Q15040; P26371: KRTAP5-9; NbExp=3; IntAct=EBI-2510602, EBI-3958099; CC Q15040; Q9BYQ4: KRTAP9-2; NbExp=6; IntAct=EBI-2510602, EBI-1044640; CC Q15040; Q9BYQ3: KRTAP9-3; NbExp=3; IntAct=EBI-2510602, EBI-1043191; CC Q15040; Q99750: MDFI; NbExp=3; IntAct=EBI-2510602, EBI-724076; CC Q15040; Q9UJV3-2: MID2; NbExp=3; IntAct=EBI-2510602, EBI-10172526; CC Q15040; Q5JR59-3: MTUS2; NbExp=3; IntAct=EBI-2510602, EBI-11522433; CC Q15040; Q7Z3S9: NOTCH2NLA; NbExp=3; IntAct=EBI-2510602, EBI-945833; CC Q15040; P0DPK4: NOTCH2NLC; NbExp=3; IntAct=EBI-2510602, EBI-22310682; CC Q15040; P22735: TGM1; NbExp=3; IntAct=EBI-2510602, EBI-2562368; CC Q15040; Q13077: TRAF1; NbExp=3; IntAct=EBI-2510602, EBI-359224; CC Q15040; P36406: TRIM23; NbExp=3; IntAct=EBI-2510602, EBI-740098; CC Q15040; P14373: TRIM27; NbExp=4; IntAct=EBI-2510602, EBI-719493; CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:23625928}. CC Cytoplasm {ECO:0000269|PubMed:23625928}. Note=Ubiquitination increases CC localization the plasma membrane. In the cytosol, the unubiquitinated CC form may be associated with the cytoskeleton via ACTB-binding. CC -!- PTM: Monoubiquitinated (By similarity). Ubiquitination activates CC deubiquitination activity in vitro. {ECO:0000250}. CC -!- SEQUENCE CAUTION: CC Sequence=BAA06682.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; D31884; BAA06682.2; ALT_INIT; mRNA. DR EMBL; CR456473; CAG30359.1; -; mRNA. DR EMBL; AK291827; BAF84516.1; -; mRNA. DR EMBL; AL021707; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471095; EAW60259.1; -; Genomic_DNA. DR EMBL; BC015026; AAH15026.1; -; mRNA. DR CCDS; CCDS13976.1; -. DR RefSeq; NP_055691.1; NM_014876.5. DR RefSeq; XP_005261933.1; XM_005261876.2. DR RefSeq; XP_005261934.1; XM_005261877.2. DR RefSeq; XP_005261935.1; XM_005261878.2. DR RefSeq; XP_005261936.1; XM_005261879.2. DR AlphaFoldDB; Q15040; -. DR SMR; Q15040; -. DR BioGRID; 115257; 55. DR IntAct; Q15040; 30. DR MINT; Q15040; -. DR STRING; 9606.ENSP00000216039; -. DR BindingDB; Q15040; -. DR ChEMBL; CHEMBL4630825; -. DR MEROPS; C86.004; -. DR iPTMnet; Q15040; -. DR PhosphoSitePlus; Q15040; -. DR BioMuta; JOSD1; -. DR DMDM; 3123051; -. DR EPD; Q15040; -. DR jPOST; Q15040; -. DR MassIVE; Q15040; -. DR MaxQB; Q15040; -. DR PaxDb; 9606-ENSP00000216039; -. DR PeptideAtlas; Q15040; -. DR ProteomicsDB; 60388; -. DR Pumba; Q15040; -. DR Antibodypedia; 202; 122 antibodies from 16 providers. DR DNASU; 9929; -. DR Ensembl; ENST00000216039.9; ENSP00000216039.5; ENSG00000100221.11. DR Ensembl; ENST00000683374.1; ENSP00000506752.1; ENSG00000100221.11. DR GeneID; 9929; -. DR KEGG; hsa:9929; -. DR MANE-Select; ENST00000683374.1; ENSP00000506752.1; NM_001360236.2; NP_001347165.1. DR UCSC; uc003awf.4; human. DR AGR; HGNC:28953; -. DR CTD; 9929; -. DR DisGeNET; 9929; -. DR GeneCards; JOSD1; -. DR HGNC; HGNC:28953; JOSD1. DR HPA; ENSG00000100221; Low tissue specificity. DR MIM; 615323; gene. DR neXtProt; NX_Q15040; -. DR OpenTargets; ENSG00000100221; -. DR PharmGKB; PA142671644; -. DR VEuPathDB; HostDB:ENSG00000100221; -. DR eggNOG; KOG2934; Eukaryota. DR GeneTree; ENSGT00390000009228; -. DR HOGENOM; CLU_103892_0_0_1; -. DR InParanoid; Q15040; -. DR OMA; MSCMPWK; -. DR OrthoDB; 239839at2759; -. DR PhylomeDB; Q15040; -. DR TreeFam; TF313660; -. DR PathwayCommons; Q15040; -. DR Reactome; R-HSA-5689877; Josephin domain DUBs. DR SignaLink; Q15040; -. DR BioGRID-ORCS; 9929; 20 hits in 1197 CRISPR screens. DR ChiTaRS; JOSD1; human. DR GenomeRNAi; 9929; -. DR Pharos; Q15040; Tbio. DR PRO; PR:Q15040; -. DR Proteomes; UP000005640; Chromosome 22. DR RNAct; Q15040; Protein. DR Bgee; ENSG00000100221; Expressed in mucosa of sigmoid colon and 212 other cell types or tissues. DR ExpressionAtlas; Q15040; baseline and differential. DR GO; GO:0005829; C:cytosol; TAS:Reactome. DR GO; GO:0016020; C:membrane; HDA:UniProtKB. DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IBA:GO_Central. DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW. DR Gene3D; 3.90.70.40; -; 1. DR InterPro; IPR040053; JOSD1/2. DR InterPro; IPR006155; Josephin. DR PANTHER; PTHR13291; JOSEPHIN 1, 2; 1. DR PANTHER; PTHR13291:SF1; JOSEPHIN-1; 1. DR Pfam; PF02099; Josephin; 1. DR SMART; SM01246; Josephin; 1. DR PROSITE; PS50957; JOSEPHIN; 1. DR Genevisible; Q15040; HS. PE 1: Evidence at protein level; KW Cell membrane; Cytoplasm; Hydrolase; Membrane; Phosphoprotein; Protease; KW Reference proteome; Ubl conjugation; Ubl conjugation pathway. FT CHAIN 1..202 FT /note="Josephin-1" FT /id="PRO_0000053839" FT DOMAIN 23..202 FT /note="Josephin" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00331" FT ACT_SITE 36 FT /note="Nucleophile" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00331" FT ACT_SITE 139 FT /note="Proton acceptor" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00331" FT MOD_RES 15 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT VARIANT 48 FT /note="S -> R (in dbSNP:rs6001200)" FT /id="VAR_050031" FT MUTAGEN 36 FT /note="C->A: Loss of deubiquitination activity, no change FT in subcellular location." FT /evidence="ECO:0000269|PubMed:23625928" SQ SEQUENCE 202 AA; 23198 MW; 837268C393C0A5A9 CRC64; MSCVPWKGDK AKSESLELPQ AAPPQIYHEK QRRELCALHA LNNVFQDSNA FTRDTLQEIF QRLSPNTMVT PHKKSMLGNG NYDVNVIMAA LQTKGYEAVW WDKRRDVGVI ALTNVMGFIM NLPSSLCWGP LKLPLKRQHW ICVREVGGAY YNLDSKLKMP EWIGGESELR KFLKHHLRGK NCELLLVVPE EVEAHQSWRT DV //