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Protein
Submitted name:

Tnrc6b protein

Gene

Tnrc6b

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Tnrc6b proteinImported
Gene namesi
Name:Tnrc6bImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2443730. Tnrc6b.

PTM / Processingi

Proteomic databases

PeptideAtlasiQ148P0.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000064336.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6161TNRC6-PABC_bdgInterPro annotationAdd
BLAST
Domaini66 – 12964RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410IET2. Eukaryota.
ENOG410YDKH. LUCA.
HOVERGENiHBG073539.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR032226. TNRC6_PABC-bd.
IPR033500. TNRC6B.
[Graphical view]
PANTHERiPTHR13020:SF32. PTHR13020:SF32. 1 hit.
PfamiPF00076. RRM_1. 1 hit.
PF16608. TNRC6-PABC_bdg. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.

Sequencei

Sequence statusi: Complete.

Q148P0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWKNHISSRN TTPLPRPPPG LTNPKPASPW SSTAPRSVRG WGTQDSRIAS
60 70 80 90 100
ASTWSDGGSV RPSYWLVLHN LTPQIDGSTL RTICMQHGPL LTFHLNLTQG
110 120 130 140 150
TALIRYSTKQ EAAKAQTALH MCVLGNTTIL AEFATEDEVS RFLAQAQPPT
160 170 180 190 200
PAATPSAPAT GWQSLETSQN QADPVGPALN LFGGSTGLGQ WSSSAGGSSG
210 220 230 240
ADLAGTSLWG PPNYSSSLWG VPTVEDPHRM GSPAPLLPGD LLGGGSDSI
Length:249
Mass (Da):26,072
Last modified:August 22, 2006 - v1
Checksum:iEF58F970CE37D021
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC117548 mRNA. Translation: AAI17549.1.
BC118054 mRNA. Translation: AAI18055.1.
UniGeneiMm.131328.
Mm.412092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC117548 mRNA. Translation: AAI17549.1.
BC118054 mRNA. Translation: AAI18055.1.
UniGeneiMm.131328.
Mm.412092.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000064336.

Proteomic databases

PeptideAtlasiQ148P0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:2443730. Tnrc6b.

Phylogenomic databases

eggNOGiENOG410IET2. Eukaryota.
ENOG410YDKH. LUCA.
HOVERGENiHBG073539.

Miscellaneous databases

ChiTaRSiTnrc6b. mouse.
SOURCEiSearch...

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR032226. TNRC6_PABC-bd.
IPR033500. TNRC6B.
[Graphical view]
PANTHERiPTHR13020:SF32. PTHR13020:SF32. 1 hit.
PfamiPF00076. RRM_1. 1 hit.
PF16608. TNRC6-PABC_bdg. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescued clonesImported.

Entry informationi

Entry nameiQ148P0_MOUSE
AccessioniPrimary (citable) accession number: Q148P0
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: July 6, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.