Q14789 (GOGB1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 111.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Golgin subfamily B member 1 Alternative name(s): 372 kDa Golgi complex-associated protein Short name=GCP372 Giantin Macrogolgin | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 3259 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | May participate in forming intercisternal cross-bridges of the Golgi complex. |
| Subunit structure | Homodimer; disulfide-linked. Interacts with PLK3. Ref.7 |
| Subcellular location | Golgi apparatus membrane; Single-pass type I membrane protein. |
| Miscellaneous | Antigen in chronic rheumatoid arthritis and in the autoimmune disease Sjoegren syndrome. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Golgi apparatus Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Coiled coil Transmembrane Transmembrane helix |
| PTM | Disulfide bond Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | Golgi organization Traceable author statement PubMed 7691276. Source: ProtInc |
| Cellular_component | Golgi membrane Traceable author statement Ref.2. Source: ProtInc Golgi stackTraceable author statement PubMed 7691276. Source: ProtInc endoplasmic reticulum-Golgi intermediate compartmentInferred from direct assay PubMed 15308636. Source: UniProtKB integral to membraneTraceable author statement PubMed 7691276. Source: ProtInc |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| PFN2 | P35080 | 2 | EBI-709973,EBI-473138 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q14789-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q14789-2) The sequence of this isoform differs from the canonical sequence as follows: 215-215: A → AQLSSM 3102-3102: A → AVSKEK | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 3259 | 3259 | Golgin subfamily B member 1 | PRO_0000190071 | |||||
Regions | |||||||||
| Topological domain | 1 – 3235 | 3235 | Cytoplasmic Potential | ||||||
| Transmembrane | 3236 – 3256 | 21 | Helical; Potential | ||||||
| Topological domain | 3257 – 3259 | 3 | Lumenal Potential | ||||||
| Coiled coil | 48 – 593 | 546 | Potential | ||||||
| Coiled coil | 677 – 1028 | 352 | Potential | ||||||
| Coiled coil | 1062 – 1245 | 184 | Potential | ||||||
| Coiled coil | 1301 – 1779 | 479 | Potential | ||||||
| Coiled coil | 1828 – 3185 | 1358 | Potential | ||||||
| Compositional bias | 2420 – 2423 | 4 | Poly-Glu | ||||||
| Compositional bias | 2993 – 2996 | 4 | Poly-Ser | ||||||
Amino acid modifications | |||||||||
| Modified residue | 6 | 1 | Phosphoserine Ref.9 | ||||||
| Modified residue | 17 | 1 | Phosphoserine Ref.8 Ref.9 Ref.10 | ||||||
| Modified residue | 138 | 1 | Phosphoserine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 215 | 1 | A → AQLSSM in isoform 2. | VSP_045567 | |||||
| Alternative sequence | 3102 | 1 | A → AVSKEK in isoform 2. | VSP_045568 | |||||
| Natural variant | 348 | 1 | Q → H in a breast cancer sample; somatic mutation. Ref.12 | VAR_036096 | |||||
| Natural variant | 911 | 1 | T → S. Ref.4 Corresponds to variant rs3732407 [ dbSNP | Ensembl ]. | VAR_020155 | |||||
| Natural variant | 944 | 1 | A → G in a breast cancer sample; somatic mutation. Ref.12 | VAR_036097 | |||||
| Natural variant | 1212 | 1 | Y → C. Ref.4 Corresponds to variant rs3732410 [ dbSNP | Ensembl ]. | VAR_020156 | |||||
| Natural variant | 1249 | 1 | P → S. Corresponds to variant rs33988592 [ dbSNP | Ensembl ]. | VAR_031671 | |||||
| Natural variant | 1713 | 1 | C → F. Corresponds to variant rs35674179 [ dbSNP | Ensembl ]. | VAR_031672 | |||||
| Natural variant | 1765 | 1 | G → D. Ref.1 Ref.2 Ref.4 Corresponds to variant rs1127412 [ dbSNP | Ensembl ]. | VAR_031673 | |||||
Experimental info | |||||||||
| Sequence conflict | 1 – 39 | 39 | Missing in BAA05025. Ref.3 | ||||||
| Sequence conflict | 215 | 1 | A → AQLSSM in BAA05025. Ref.3 | ||||||
| Sequence conflict | 2950 | 1 | H → D in BAA05025. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Molecular genetic analyses of a 376-kilodalton Golgi complex membrane protein (giantin)." Seelig H.P., Schranz P., Schroeter H., Wiemann C., Griffiths G., Renz M. Mol. Cell. Biol. 14:2564-2576(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT ASP-1765. |
| [2] | "Macrogolgin -- a new 376 kD Golgi complex outer membrane protein as target of antibodies in patients with rheumatic diseases and HIV infections." Seelig H.P., Schranz P., Schroeter H., Wiemann C., Griffiths G., Renz M. J. Autoimmun. 7:67-91(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT ASP-1765. |
| [3] | "Molecular cloning and sequence analysis of a human 372-kDa protein localized in the Golgi complex." Sohda M., Misumi Y., Fujiwara T., Nishioka M., Ikehara Y. Biochem. Biophys. Res. Commun. 205:1399-1408(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [4] | "Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method." Oshikawa M., Sugai Y., Usami R., Ohtoko K., Toyama S., Kato S. DNA Res. 15:123-136(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANTS SER-911; CYS-1212 AND ASP-1765. Tissue: Retinal pigment epithelium. |
| [5] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "Polo-like kinase 3 is Golgi localized and involved in regulating Golgi fragmentation during the cell cycle." Ruan Q., Wang Q., Xie S., Fang Y., Darzynkiewicz Z., Guan K., Jhanwar-Uniyal M., Dai W. Exp. Cell Res. 294:51-59(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH PLK3. |
| [8] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-17, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-6 AND SER-17, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [10] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-17 AND SER-138, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [12] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS [LARGE SCALE ANALYSIS] HIS-348 AND GLY-944. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X75304 mRNA. Translation: CAA53052.1. D25542 mRNA. Translation: BAA05025.1. AB371588 mRNA. Translation: BAG48317.1. AC119736 Genomic DNA. No translation available. AC133750 Genomic DNA. No translation available. CH471052 Genomic DNA. Translation: EAW79502.1. CH471052 Genomic DNA. Translation: EAW79504.1. |
| IPI | IPI00004671. IPI00796891. |
| PIR | A56539. I52300. |
| RefSeq | NP_001243415.1. NM_001256486.1. NP_001243416.1. NM_001256487.1. NP_001243417.1. NM_001256488.1. NP_004478.3. NM_004487.4. |
| UniGene | Hs.213389. Hs.741209. |
3D structure databases | |
| ProteinModelPortal | Q14789. |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-34649N. |
| IntAct | Q14789. 14 interactions. |
| MINT | MINT-1182261. |
| STRING | 9606.ENSP00000341848. |
PTM databases | |
| PhosphoSite | Q14789. |
Polymorphism databases | |
| DMDM | 145559478. |
Proteomic databases | |
| PaxDb | Q14789. |
| PRIDE | Q14789. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000340645; ENSP00000341848; ENSG00000173230. ENST00000393667; ENSP00000377275; ENSG00000173230. |
| GeneID | 2804. |
| KEGG | hsa:2804. |
| UCSC | uc003eei.4. human. |
Organism-specific databases | |
| CTD | 2804. |
| GeneCards | GC03M121382. |
| H-InvDB | HIX0017595. |
| HGNC | HGNC:4429. GOLGB1. |
| HPA | HPA011008. HPA011555. |
| MIM | 602500. gene. |
| neXtProt | NX_Q14789. |
| PharmGKB | PA28810. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG12793. |
| HOGENOM | HOG000112754. |
| HOVERGEN | HBG051756. |
| InParanoid | Q14789. |
| OrthoDB | EOG43R3KV. |
| PhylomeDB | Q14789. |
Gene expression databases | |
| ArrayExpress | Q14789. |
| Bgee | Q14789. |
| CleanEx | HS_GOLGB1. |
| Genevestigator | Q14789. |
| GermOnline | ENSG00000173230. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR026202. GOLGB1. [Graphical view] |
| PANTHER | PTHR18887. PTHR18887. 1 hit. |
| ProtoNet | Search... |
Other | |
| ChiTaRS | GOLGB1. human. |
| GenomeRNAi | 2804. |
| NextBio | 11053. |
| SOURCE | Search... |
Entry information
| Entry name | GOGB1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q14789 Secondary accession number(s): B2ZZ91 Q14398 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |

Clusters with
