Q14690 (RRP5_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 121.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein RRP5 homolog Alternative name(s): NF-kappa-B-binding protein Short name=NFBP Programmed cell death protein 11 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1871 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Essential for the generation of mature 18S rRNA, specifically necessary for cleavages at sites A0, 1 and 2 of the 47S precursor. Directly interacts with U3 snoRNA. Ref.9 Involved in the biogenesis of rRNA By similarity. Ref.9 |
| Subunit structure | Interacts with NF-kappa-B p50/NFKB1 and NF-kappa-B p65/RELA. Ref.8 |
| Subcellular location | |
| Sequence similarities | Contains 4 HAT repeats. Contains 12 S1 motif domains. |
| Sequence caution | The sequence AAG01992.1 differs from that shown. Reason: Erroneous translation. Wrong choice of frame. The sequence AAH49838.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence. The sequence AAH64486.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence. The sequence AAH80560.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence. The sequence AAI11041.1 differs from that shown. Reason: Contaminating sequence. Potential poly-A sequence. The sequence BAA11502.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | rRNA processing |
| Cellular component | Nucleus |
| Coding sequence diversity | Polymorphism |
| Domain | Repeat |
| PTM | Acetylation Phosphoprotein |
| Technical term | 3D-structure Complete proteome Direct protein sequencing Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | mRNA processing Inferred from electronic annotation. Source: InterPro rRNA processingInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | cytosol Inferred from electronic annotation. Source: Compara nucleolusInferred from electronic annotation. Source: UniProtKB-SubCell nucleusInferred from direct assay Ref.8. Source: UniProtKB |
| Molecular_function | RNA binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| NFKB1 | P19838 | 2 | EBI-300028,EBI-300010 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||
Molecule processing | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Initiator methionine | 1 | 1 | Removed Ref.5 | ||||||||||||||||||||
| Chain | 2 – 1871 | 1870 | Protein RRP5 homolog | PRO_0000205762 | |||||||||||||||||||
Regions | |||||||||||||||||||||||
| Domain | 83 – 171 | 89 | S1 motif 1 | ||||||||||||||||||||
| Domain | 187 – 258 | 72 | S1 motif 2 | ||||||||||||||||||||
| Domain | 281 – 346 | 66 | S1 motif 3 | ||||||||||||||||||||
| Domain | 365 – 436 | 72 | S1 motif 4 | ||||||||||||||||||||
| Domain | 453 – 522 | 70 | S1 motif 5 | ||||||||||||||||||||
| Domain | 542 – 611 | 70 | S1 motif 6 | ||||||||||||||||||||
| Domain | 636 – 707 | 72 | S1 motif 7 | ||||||||||||||||||||
| Domain | 729 – 798 | 70 | S1 motif 8 | ||||||||||||||||||||
| Domain | 1036 – 1109 | 74 | S1 motif 9 | ||||||||||||||||||||
| Domain | 1149 – 1222 | 74 | S1 motif 10 | ||||||||||||||||||||
| Domain | 1230 – 1298 | 69 | S1 motif 11 | ||||||||||||||||||||
| Domain | 1324 – 1396 | 73 | S1 motif 12 | ||||||||||||||||||||
| Repeat | 1599 – 1631 | 33 | HAT 1 | ||||||||||||||||||||
| Repeat | 1705 – 1737 | 33 | HAT 2 | ||||||||||||||||||||
| Repeat | 1775 – 1807 | 33 | HAT 3 | ||||||||||||||||||||
| Repeat | 1809 – 1844 | 36 | HAT 4 | ||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||
| Modified residue | 2 | 1 | N-acetylalanine Ref.5 | ||||||||||||||||||||
| Modified residue | 1360 | 1 | Phosphoserine Ref.14 | ||||||||||||||||||||
| Modified residue | 1362 | 1 | Phosphoserine Ref.14 | ||||||||||||||||||||
| Modified residue | 1493 | 1 | Phosphoserine Ref.11 | ||||||||||||||||||||
| Modified residue | 1498 | 1 | Phosphoserine Ref.10 Ref.11 | ||||||||||||||||||||
Natural variations | |||||||||||||||||||||||
| Natural variant | 397 | 1 | S → N. Corresponds to variant rs7074814 [ dbSNP | Ensembl ]. | VAR_054485 | |||||||||||||||||||
| Natural variant | 623 | 1 | A → S. Corresponds to variant rs11598673 [ dbSNP | Ensembl ]. | VAR_031669 | |||||||||||||||||||
| Natural variant | 780 | 1 | A → S. Corresponds to variant rs11591914 [ dbSNP | Ensembl ]. | VAR_054486 | |||||||||||||||||||
| Natural variant | 1216 | 1 | L → F. Ref.1 Ref.4 Corresponds to variant rs2986014 [ dbSNP | Ensembl ]. | VAR_031670 | |||||||||||||||||||
| Natural variant | 1453 | 1 | P → S. Corresponds to variant rs2274289 [ dbSNP | Ensembl ]. | VAR_054487 | |||||||||||||||||||
| Natural variant | 1871 | 1 | D → A. Ref.6 Corresponds to variant rs7831 [ dbSNP | Ensembl ]. | VAR_014930 | |||||||||||||||||||
Experimental info | |||||||||||||||||||||||
| Sequence conflict | 1431 | 1 | Missing in AAH49838. Ref.4 | ||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||
| Turn | 181 – 183 | 3 | |||||||||||||||||||||
| Beta strand | 189 – 197 | 9 | |||||||||||||||||||||
| Beta strand | 199 – 205 | 7 | |||||||||||||||||||||
| Beta strand | 212 – 216 | 5 | |||||||||||||||||||||
| Helix | 217 – 227 | 11 | |||||||||||||||||||||
| Beta strand | 228 – 230 | 3 | |||||||||||||||||||||
| Beta strand | 238 – 245 | 8 | |||||||||||||||||||||
| Beta strand | 252 – 256 | 5 | |||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1." Nagase T., Seki N., Ishikawa K., Tanaka A., Nomura N. DNA Res. 3:17-24(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-1216. Tissue: Bone marrow. |
| [2] | "The DNA sequence and comparative analysis of human chromosome 10." Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J. Rogers J.Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1442, VARIANT PHE-1216. Tissue: Lymphoma and Uterus. |
| [5] | Bienvenut W.V., Matallanas D., Kolch W. Submitted (JUL-2009) to UniProtKB Cited for: PROTEIN SEQUENCE OF 2-10 AND 1343-1352, CLEAVAGE OF INITIATOR METHIONINE, ACETYLATION AT ALA-2, MASS SPECTROMETRY. Tissue: Mammary carcinoma. |
| [6] | Zhou J., Yu W., Tang H., Mei G., Tsang Y.T.M., Bouck J., Gibbs R.A., Margolin J.F. Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1508-1871, VARIANT ALA-1871. Tissue: Brain. |
| [7] | "Functional proteomic analysis of human nucleolus." Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J. Mol. Biol. Cell 13:4100-4109(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Identification of a novel protein from glial cells based on its ability to interact with NF-kappaB subunits." Sweet T., Khalili K., Sawaya B.E., Amini S. J. Cell. Biochem. 90:884-891(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH NFKB1 AND RELA, SUBCELLULAR LOCATION. |
| [9] | "Evidence for involvement of NFBP in processing of ribosomal RNA." Sweet T., Yen W., Khalili K., Amini S. J. Cell. Physiol. 214:381-388(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [10] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1498, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1493 AND SER-1498, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Leukemic T-cell. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1360 AND SER-1362, MASS SPECTROMETRY. |
| [15] | "Solution structure of the S1 RNA binding domain from human hypothetical protein BAA11502." RIKEN structural genomics initiative (RSGI) Submitted (NOV-2004) to the PDB data bank Cited for: STRUCTURE BY NMR OF 173-278. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | D80007 mRNA. Translation: BAA11502.1. Different initiation. AL139339, AL591408, AL603983 Genomic DNA. Translation: CAH71487.1. AL591408, AL139339, AL603983 Genomic DNA. Translation: CAI16749.1. AL603983, AL139339, AL591408 Genomic DNA. Translation: CAI15102.1. CH471066 Genomic DNA. Translation: EAW49641.1. BC049838 mRNA. Translation: AAH49838.1. Sequence problems. BC064486 mRNA. Translation: AAH64486.1. Sequence problems. BC080560 mRNA. Translation: AAH80560.1. Sequence problems. BC111040 mRNA. Translation: AAI11041.1. Sequence problems. AY007124 mRNA. Translation: AAG01992.1. Sequence problems. | ||||||||||||
| IPI | IPI00400922. | ||||||||||||
| RefSeq | NP_055791.1. NM_014976.1. | ||||||||||||
| UniGene | Hs.239499. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q14690. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q14690. 4 interactions. | ||||||||||||
| MINT | MINT-1388150. | ||||||||||||
| STRING | 9606.ENSP00000358812. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q14690. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 145559523. | ||||||||||||
2D gel databases | |||||||||||||
| SWISS-2DPAGE | Q14690. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q14690. | ||||||||||||
| PRIDE | Q14690. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 22984. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000369797; ENSP00000358812; ENSG00000148843. | ||||||||||||
| GeneID | 22984. | ||||||||||||
| KEGG | hsa:22984. | ||||||||||||
| UCSC | uc001kwy.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 22984. | ||||||||||||
| GeneCards | GC10P105156. | ||||||||||||
| H-InvDB | HIX0009176. | ||||||||||||
| HGNC | HGNC:13408. PDCD11. | ||||||||||||
| HPA | CAB026472. HPA017924. | ||||||||||||
| MIM | 612333. gene. | ||||||||||||
| neXtProt | NX_Q14690. | ||||||||||||
| PharmGKB | PA134909758. | ||||||||||||
| HUGE | Search... | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0539. | ||||||||||||
| HOGENOM | HOG000088607. | ||||||||||||
| HOVERGEN | HBG108419. | ||||||||||||
| InParanoid | Q14690. | ||||||||||||
| KO | K14792. | ||||||||||||
| OMA | LHLADIY. | ||||||||||||
| OrthoDB | EOG4XKV63. | ||||||||||||
| PhylomeDB | Q14690. | ||||||||||||
Gene expression databases | |||||||||||||
| Bgee | Q14690. | ||||||||||||
| CleanEx | HS_PDCD11. | ||||||||||||
| Genevestigator | Q14690. | ||||||||||||
| GermOnline | ENSG00000148843. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.25.40.10. 1 hit. 2.40.50.140. 11 hits. | ||||||||||||
| InterPro | IPR003107. HAT. IPR012340. NA-bd_OB-fold. IPR003029. Rbsml_prot_S1_RNA-bd_dom. IPR022967. RNA-binding_domain_S1. IPR008847. Suf. IPR013026. TPR-contain_dom. IPR011990. TPR-like_helical. [Graphical view] | ||||||||||||
| Pfam | PF00575. S1. 5 hits. PF05843. Suf. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00386. HAT. 7 hits. SM00316. S1. 13 hits. [Graphical view] | ||||||||||||
| SUPFAM | SSF50249. Nucleic_acid_OB. 12 hits. | ||||||||||||
| PROSITE | PS50126. S1. 12 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | PDCD11. human. | ||||||||||||
| EvolutionaryTrace | Q14690. | ||||||||||||
| GenomeRNAi | 22984. | ||||||||||||
| NextBio | 43819. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | RRP5_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q14690 Secondary accession number(s): Q2TA92 Q9H4P1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 10 Human chromosome 10: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
