Q14202 (ZMYM3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 110.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Zinc finger MYM-type protein 3 Alternative name(s): Zinc finger protein 261 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1370 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Plays a role in the regulation of cell morphology and cytoskeletal organization. Ref.11 |
| Subunit structure | May be a component of a BHC histone deacetylase complex that contains HDAC1, HDAC2, HMG20B/BRAF35, KDM1A, RCOR1/CoREST, PHF21A/BHC80, ZMYM2, ZNF217, ZMYM3, GSE1 and GTF2I. Ref.7 |
| Subcellular location | Nucleus By similarity. |
| Tissue specificity | Most abundant in brain, moderate in muscle and heart, low in other tissues except placenta. |
| Involvement in disease | A chromosomal aberration involving ZMYM3 may be a cause of X-linked mental retardation in Xq13.1. Translocation t(X;13)(q13.1;?). |
| Sequence similarities | Contains 9 MYM-type zinc fingers. |
| Sequence caution | The sequence BAA20839.2 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Chromosomal rearrangement |
| Domain | Repeat Zinc-finger |
| Ligand | Metal-binding Zinc |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | cytoskeleton organization Inferred from mutant phenotype Ref.11. Source: UniProtKB multicellular organismal developmentTraceable author statement PubMed 10486218. Source: ProtInc regulation of cell morphogenesisInferred from mutant phenotype Ref.11. Source: UniProtKB |
| Cellular_component | nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | DNA binding Traceable author statement PubMed 10486218. Source: ProtInc zinc ion bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q14202-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q14202-2) The sequence of this isoform differs from the canonical sequence as follows: 793-804: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q14202-3) The sequence of this isoform differs from the canonical sequence as follows: 491-495: KNTRV → VGPRE 496-1370: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1370 | 1370 | Zinc finger MYM-type protein 3 | PRO_0000191378 | |||||
Regions | |||||||||
| Zinc finger | 332 – 366 | 35 | MYM-type 1 | ||||||
| Zinc finger | 378 – 422 | 45 | MYM-type 2 | ||||||
| Zinc finger | 429 – 464 | 36 | MYM-type 3 | ||||||
| Zinc finger | 477 – 511 | 35 | MYM-type 4 | ||||||
| Zinc finger | 521 – 559 | 39 | MYM-type 5 | ||||||
| Zinc finger | 567 – 604 | 38 | MYM-type 6 | ||||||
| Zinc finger | 612 – 646 | 35 | MYM-type 7 | ||||||
| Zinc finger | 653 – 692 | 40 | MYM-type 8 | ||||||
| Zinc finger | 699 – 733 | 35 | MYM-type 9 | ||||||
Amino acid modifications | |||||||||
| Modified residue | 263 | 1 | Phosphoserine Ref.8 Ref.9 | ||||||
| Modified residue | 267 | 1 | Phosphoserine Ref.8 Ref.9 | ||||||
| Modified residue | 464 | 1 | Phosphoserine Ref.9 | ||||||
Natural variations | |||||||||
| Alternative sequence | 491 – 495 | 5 | KNTRV → VGPRE in isoform 3. | VSP_043262 | |||||
| Alternative sequence | 496 – 1370 | 875 | Missing in isoform 3. | VSP_043263 | |||||
| Alternative sequence | 793 – 804 | 12 | Missing in isoform 2. | VSP_004492 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and characterization of DXS6673E, a candidate gene for X-linked mental retardation in Xq13.1." van der Maarel S.M., Scholten I.H.G.M., Huber I., Phillippe C., Suijkerbuijk R.F., Gilgenkrantz S., Kere J., Cremers F.P.M., Ropers H.-H. Hum. Mol. Genet. 5:887-897(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Tissue: Fetal brain. |
| [2] | "Prediction of the coding sequences of unidentified human genes. VII. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro." Nagase T., Ishikawa K., Nakajima D., Ohira M., Seki N., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O. DNA Res. 4:141-150(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Brain. |
| [3] | "Cloning of human full-length CDSs in BD Creator(TM) system donor vector." Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A. Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). |
| [4] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3). Tissue: Lymph and Muscle. |
| [7] | "A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes." Hakimi M.-A., Dong Y., Lane W.S., Speicher D.W., Shiekhattar R. J. Biol. Chem. 278:7234-7239(2003) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION IN THE BHC COMPLEX WITH HDAC1; HDAC2; HMG20B; KDM1A; RCOR1; PHF21A; ZMYM2; ZNF217; KIAA0182 AND GTF2I. |
| [8] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-263 AND SER-267, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-263; SER-267 AND SER-464, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [11] | "Identification and characterization of a set of conserved and new regulators of cytoskeletal organisation, cell morphology and migration." Bai S.W., Herrera-Abreu M.T., Rohn J.L., Racine V., Tajadura V., Suryavanshi N., Bechtel S., Wiemann S., Baum B., Ridley A.J. BMC Biol. 9:54-54(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [12] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | X95808 mRNA. Translation: CAA65075.1. AB002383 mRNA. Translation: BAA20839.2. Different initiation. BT007095 mRNA. Translation: AAP35759.1. AL590762 Genomic DNA. No translation available. CH471132 Genomic DNA. Translation: EAX05302.1. CH471132 Genomic DNA. Translation: EAX05303.1. BC069057 mRNA. Translation: AAH69057.1. BC013009 mRNA. Translation: AAH13009.1. |
| IPI | IPI00029484. IPI00219027. IPI00645504. |
| RefSeq | NP_001164633.1. NM_001171162.1. NP_001164634.1. NM_001171163.1. NP_005087.1. NM_005096.3. NP_963893.1. NM_201599.2. |
| UniGene | Hs.522684. |
3D structure databases | |
| ProteinModelPortal | Q14202. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q14202. 5 interactions. |
| STRING | 9606.ENSP00000322845. |
PTM databases | |
| PhosphoSite | Q14202. |
Polymorphism databases | |
| DMDM | 12644413. |
Proteomic databases | |
| PaxDb | Q14202. |
| PRIDE | Q14202. |
Protocols and materials databases | |
| DNASU | 9203. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000314425; ENSP00000322845; ENSG00000147130. ENST00000353904; ENSP00000343909; ENSG00000147130. ENST00000373981; ENSP00000363093; ENSG00000147130. ENST00000373998; ENSP00000363110; ENSG00000147130. |
| GeneID | 9203. |
| KEGG | hsa:9203. |
| UCSC | uc004dzh.2. human. uc004dzj.2. human. |
Organism-specific databases | |
| CTD | 9203. |
| GeneCards | GC0XM070459. |
| HGNC | HGNC:13054. ZMYM3. |
| HPA | HPA003211. |
| MIM | 300061. gene. |
| neXtProt | NX_Q14202. |
| PharmGKB | PA37632. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG86062. |
| HOGENOM | HOG000293258. |
| HOVERGEN | HBG057545. |
| PhylomeDB | Q14202. |
Gene expression databases | |
| ArrayExpress | Q14202. |
| Bgee | Q14202. |
| CleanEx | HS_ZMYM3. |
| Genevestigator | Q14202. |
| GermOnline | ENSG00000147130. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR021893. DUF3504. IPR011017. TRASH_dom. IPR010507. Znf_MYM. [Graphical view] |
| Pfam | PF12012. DUF3504. 1 hit. PF06467. zf-FCS. 10 hits. [Graphical view] |
| SMART | SM00746. TRASH. 10 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 9203. |
| NextBio | 34497. |
| SOURCE | Search... |
Entry information
| Entry name | ZMYM3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q14202 Secondary accession number(s): D3DVV3, O15089, Q96E26 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
