Q14162 (SREC_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 119.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Scavenger receptor class F member 1 Alternative name(s): Acetyl LDL receptor Scavenger receptor expressed by endothelial cells 1 Short name=SREC-I | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 830 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Mediates the binding and degradation of acetylated low density lipoprotein (Ac-LDL). Mediates heterophilic interactions, suggesting a function as adhesion protein. Plays a role in the regulation of neurite-like outgrowth By similarity. |
| Subunit structure | Heterophilic interaction with SREC2 via its extracellular domain. The heterophilic interaction is suppressed by the presence of ligand such as Ac-LDL. Interacts with AVIL By similarity. |
| Subcellular location | Membrane; Single-pass type I membrane protein Potential. |
| Tissue specificity | Endothelial cells. |
| Sequence similarities | Contains 6 EGF-like domains. |
Ontologies
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q14162-1) Also known as: SREC-1; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q14162-2) Also known as: SREC-5; The sequence of this isoform differs from the canonical sequence as follows: 330-415: Missing. | ||||||
| Isoform 3 (identifier: Q14162-3) Also known as: SREC-3; The sequence of this isoform differs from the canonical sequence as follows: 496-569: VSHHDPEVPF...AAGAFPPPED → ASSSRPLPAG...RHSPSRAPPA 570-830: Missing. | ||||||
| Isoform 4 (identifier: Q14162-4) Also known as: SREC-4; The sequence of this isoform differs from the canonical sequence as follows: 338-830: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 5 (identifier: Q14162-5) Also known as: SREC-2; The sequence of this isoform differs from the canonical sequence as follows: 338-342: CEDPC → GPVIL 343-830: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 19 | 19 | Potential | ||||||||
| Chain | 20 – 830 | 811 | Scavenger receptor class F member 1 | PRO_0000007738 | |||||||
Regions | |||||||||||
| Topological domain | 20 – 421 | 402 | Extracellular Potential | ||||||||
| Transmembrane | 422 – 442 | 21 | Helical; Potential | ||||||||
| Topological domain | 443 – 830 | 388 | Cytoplasmic Potential | ||||||||
| Domain | 53 – 87 | 35 | EGF-like 1 | ||||||||
| Domain | 95 – 130 | 36 | EGF-like 2 | ||||||||
| Domain | 155 – 191 | 37 | EGF-like 3 | ||||||||
| Domain | 215 – 249 | 35 | EGF-like 4 | ||||||||
| Domain | 302 – 339 | 38 | EGF-like 5 | ||||||||
| Domain | 351 – 382 | 32 | EGF-like 6 | ||||||||
| Compositional bias | 431 – 438 | 8 | Poly-Leu | ||||||||
| Compositional bias | 476 – 620 | 145 | Pro/Ser-rich | ||||||||
| Compositional bias | 622 – 798 | 177 | Gly-rich | ||||||||
Amino acid modifications | |||||||||||
| Glycosylation | 289 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 382 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Glycosylation | 393 | 1 | N-linked (GlcNAc...) Potential | ||||||||
| Disulfide bond | 57 ↔ 69 | By similarity | |||||||||
| Disulfide bond | 63 ↔ 75 | By similarity | |||||||||
| Disulfide bond | 77 ↔ 86 | By similarity | |||||||||
| Disulfide bond | 99 ↔ 111 | By similarity | |||||||||
| Disulfide bond | 105 ↔ 118 | By similarity | |||||||||
| Disulfide bond | 120 ↔ 129 | By similarity | |||||||||
| Disulfide bond | 159 ↔ 172 | By similarity | |||||||||
| Disulfide bond | 165 ↔ 179 | By similarity | |||||||||
| Disulfide bond | 181 ↔ 190 | By similarity | |||||||||
| Disulfide bond | 219 ↔ 230 | By similarity | |||||||||
| Disulfide bond | 225 ↔ 237 | By similarity | |||||||||
| Disulfide bond | 239 ↔ 248 | By similarity | |||||||||
| Disulfide bond | 306 ↔ 319 | By similarity | |||||||||
| Disulfide bond | 313 ↔ 326 | By similarity | |||||||||
| Disulfide bond | 329 ↔ 338 | By similarity | |||||||||
| Disulfide bond | 355 ↔ 363 | By similarity | |||||||||
| Disulfide bond | 358 ↔ 370 | By similarity | |||||||||
| Disulfide bond | 372 ↔ 381 | By similarity | |||||||||
Natural variations | |||||||||||
| Alternative sequence | 330 – 415 | 86 | Missing in isoform 2. | VSP_039956 | |||||||
| Alternative sequence | 338 – 830 | 493 | Missing in isoform 4. | VSP_039957 | |||||||
| Alternative sequence | 338 – 342 | 5 | CEDPC → GPVIL in isoform 5. | VSP_039958 | |||||||
| Alternative sequence | 343 – 830 | 488 | Missing in isoform 5. | VSP_039959 | |||||||
| Alternative sequence | 496 – 569 | 74 | VSHHD…PPPED → ASSSRPLPAGPLMTPSHPIL SLERQMRFLPTVCHPKKGWS LWPRQGRQRPAWLQVLSRPL RTPPRHSPSRAPPA in isoform 3. | VSP_039960 | |||||||
| Alternative sequence | 570 – 830 | 261 | Missing in isoform 3. | VSP_039961 | |||||||
| Natural variant | 425 | 1 | A → V. Ref.1 Ref.2 Ref.3 Ref.5 Ref.6 Corresponds to variant rs2272011 [ dbSNP | Ensembl ]. | VAR_047249 | |||||||
| Natural variant | 618 | 1 | R → K. Corresponds to variant rs35455643 [ dbSNP | Ensembl ]. | VAR_047250 | |||||||
| Natural variant | 639 | 1 | E → D. Ref.1 Ref.2 Ref.3 Ref.6 Corresponds to variant rs3744644 [ dbSNP | Ensembl ]. | VAR_047251 | |||||||
| Natural variant | 662 | 1 | R → W. Ref.1 Ref.3 Corresponds to variant rs8072430 [ dbSNP | Ensembl ]. | VAR_047252 | |||||||
| Natural variant | 667 | 1 | G → S. Ref.1 Ref.2 Ref.3 Ref.6 Corresponds to variant rs4790250 [ dbSNP | Ensembl ]. | VAR_047253 | |||||||
| Natural variant | 748 | 1 | G → V. Corresponds to variant rs3760460 [ dbSNP | Ensembl ]. | VAR_047254 | |||||||
Experimental info | |||||||||||
| Sequence conflict | 328 – 329 | 2 | RC → PG in BAC02696. Ref.2 | ||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Expression cloning of a novel scavenger receptor from human endothelial cells." Adachi H., Tsujimoto M., Arai H., Inoue K. J. Biol. Chem. 272:31217-31220(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANTS VAL-425; ASP-639; TRP-662 AND SER-667. Tissue: Umbilical vein endothelial cell. |
| [2] | "Characterization of the human gene encoding the scavenger receptor expressed by endothelial cell and its regulation by a novel transcription factor, endothelial zinc finger protein-2." Adachi H., Tsujimoto M. J. Biol. Chem. 277:24014-24021(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1), NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2; 3; 4 AND 5), VARIANTS VAL-425; ASP-639 AND SER-667. Tissue: Peripheral blood leukocyte. |
| [3] | "Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1." Nagase T., Seki N., Tanaka A., Ishikawa K., Nomura N. DNA Res. 2:167-174(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS VAL-425; ASP-639; TRP-662 AND SER-667. Tissue: Bone marrow. |
| [4] | "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage." Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L. Nusbaum C.Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT VAL-425. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANTS VAL-425; ASP-639 AND SER-667. Tissue: Testis. |
| [7] | "Phosphoproteome of resting human platelets." Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A. J. Proteome Res. 7:526-534(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Platelet. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | D86864 mRNA. Translation: BAA24070.1. AB052946 Genomic DNA. Translation: BAC02692.1. AB052947 mRNA. Translation: BAC02693.1. AB052948 mRNA. Translation: BAC02694.1. AB052949 mRNA. Translation: BAC02695.1. AB052950 mRNA. Translation: BAC02696.1. D63483 mRNA. Translation: BAA09770.1. AC130343 Genomic DNA. No translation available. CH471108 Genomic DNA. Translation: EAW90596.1. BC039735 mRNA. Translation: AAH39735.1. |
| IPI | IPI00066367. IPI00169257. IPI00169258. IPI00337750. IPI00337751. |
| RefSeq | NP_003684.2. NM_003693.2. NP_663325.1. NM_145350.1. NP_663327.2. NM_145352.2. |
| UniGene | Hs.647430. |
3D structure databases | |
| ProteinModelPortal | Q14162. |
| SMR | Q14162. Positions 89-415. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000263071. |
PTM databases | |
| PhosphoSite | Q14162. |
Polymorphism databases | |
| DMDM | 311033530. |
Proteomic databases | |
| PaxDb | Q14162. |
| PRIDE | Q14162. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000263071; ENSP00000263071; ENSG00000074660. ENST00000348987; ENSP00000323964; ENSG00000074660. ENST00000434376; ENSP00000411167; ENSG00000074660. ENST00000571272; ENSP00000458174; ENSG00000074660. |
| GeneID | 8578. |
| KEGG | hsa:8578. |
| UCSC | uc002fsy.1. human. uc002fsz.1. human. uc010cjv.1. human. |
Organism-specific databases | |
| CTD | 8578. |
| GeneCards | GC17M001537. |
| H-InvDB | HIX0013404. |
| HGNC | HGNC:16820. SCARF1. |
| HPA | HPA035108. |
| MIM | 607873. gene. |
| neXtProt | NX_Q14162. |
| PharmGKB | PA38420. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG284054. |
| HOGENOM | HOG000015093. |
| HOVERGEN | HBG099941. |
| InParanoid | Q14162. |
| OMA | GWWGPEC. |
| OrthoDB | EOG4S1T6G. |
Gene expression databases | |
| ArrayExpress | Q14162. |
| Bgee | Q14162. |
| CleanEx | HS_SCARF1. |
| Genevestigator | Q14162. |
| GermOnline | ENSG00000074660. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR000742. EG-like_dom. IPR013032. EGF-like_CS. IPR002049. EGF_laminin. IPR009030. Growth_fac_rcpt. [Graphical view] |
| Pfam | PF12661. hEGF. 3 hits. PF00053. Laminin_EGF. 1 hit. [Graphical view] |
| SMART | SM00181. EGF. 5 hits. [Graphical view] |
| SUPFAM | SSF57184. Grow_fac_recept. 1 hit. |
| PROSITE | PS00022. EGF_1. 6 hits. PS01186. EGF_2. 6 hits. PS50026. EGF_3. 3 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 8578. |
| NextBio | 32179. |
| SOURCE | Search... |
Entry information
| Entry name | SREC_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q14162 Secondary accession number(s): A8MQ05 Q8NHD5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 17 Human chromosome 17: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
