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Protein

Protein FAM53B

Gene

FAM53B

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM53B
Gene namesi
Name:FAM53B
Synonyms:KIAA0140
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 10

Organism-specific databases

HGNCiHGNC:28968. FAM53B.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134957918.

Polymorphism and mutation databases

BioMutaiFAM53B.
DMDMi215273981.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 422422Protein FAM53BPRO_0000189544Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei167 – 1671PhosphoserineCombined sources
Modified residuei212 – 2121PhosphoserineBy similarity
Modified residuei268 – 2681PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ14153.
MaxQBiQ14153.
PaxDbiQ14153.
PRIDEiQ14153.

PTM databases

iPTMnetiQ14153.
PhosphoSiteiQ14153.

Expressioni

Tissue specificityi

Detected in skeletal muscle, kidney, spleen, thyroid, testis, ovary, small intestine, colon and peripheral blood.1 Publication

Gene expression databases

BgeeiQ14153.
CleanExiHS_FAM53B.
GenevisibleiQ14153. HS.

Organism-specific databases

HPAiHPA037751.
HPA037752.

Interactioni

Protein-protein interaction databases

BioGridi115033. 1 interaction.
IntActiQ14153. 2 interactions.
MINTiMINT-3976476.
STRINGi9606.ENSP00000338532.

Structurei

3D structure databases

ProteinModelPortaliQ14153.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM53 family.Curated

Phylogenomic databases

eggNOGiENOG410IE5U. Eukaryota.
ENOG410YBVC. LUCA.
GeneTreeiENSGT00530000063371.
HOGENOMiHOG000059662.
HOVERGENiHBG051537.
InParanoidiQ14153.
OMAiECLPEKC.
OrthoDBiEOG7H1JKF.
PhylomeDBiQ14153.
TreeFamiTF332095.

Family and domain databases

InterProiIPR029356. FAM53.
[Graphical view]
PfamiPF15242. FAM53. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q14153-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVMVLSESLS TRGADSIACG TFSRELHTPK KMSQGPTLFS CGIMENDRWR
60 70 80 90 100
DLDRKCPLQI DQPSTSIWEC LPEKDSSLWH REAVTACAVT SLIKDLSISD
110 120 130 140 150
HNGNPSAPPS KRQCRSLSFS DEMSSCRTSW RPLGSKVWTP VEKRRCYSGG
160 170 180 190 200
SVQRYSNGFS TMQRSSSFSL PSRANVLSSP CDQAGLHHRF GGQPCQGVPG
210 220 230 240 250
SAPCGQAGDT WSPDLHPVGG GRLDLQRSLS CSHEQFSFVE YCPPSANSTP
260 270 280 290 300
ASTPELARRS SGLSRSRSQP CVLNDKKVGV KRRRPEEVQE QRPSLDLAKM
310 320 330 340 350
AQNCQTFSSL SCLSAGTEDC GPQSPFARHV SNTRAWTALL SASGPGGRTP
360 370 380 390 400
AGTPVPEPLP PSFDDHLACQ EDLSCEESDS CALDEDCGRR AEPAAAWRDR
410 420
GAPGNSLCSL DGELDIEQIE KN
Length:422
Mass (Da):45,768
Last modified:November 25, 2008 - v2
Checksum:i7F7768093408D791
GO
Isoform 2 (identifier: Q14153-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     303-305: NCQ → IAP
     306-422: Missing.

Note: No experimental confirmation available.
Show »
Length:305
Mass (Da):33,446
Checksum:iD1743235823004B7
GO

Sequence cautioni

The sequence BAA09489.2 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti368 – 3681A → V in BAA09489 (PubMed:8590280).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei303 – 3053NCQ → IAP in isoform 2. 1 PublicationVSP_009932
Alternative sequencei306 – 422117Missing in isoform 2. 1 PublicationVSP_009933Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50930 mRNA. Translation: BAA09489.2. Different initiation.
AK127343 mRNA. Translation: BAG54488.1.
AL513190, AC068896 Genomic DNA. Translation: CAH70375.1.
AL513190, AC068896 Genomic DNA. Translation: CAH70376.1.
CH471066 Genomic DNA. Translation: EAW49259.1.
CH471066 Genomic DNA. Translation: EAW49260.1.
CH471066 Genomic DNA. Translation: EAW49261.1.
CH471066 Genomic DNA. Translation: EAW49262.1.
BC031654 mRNA. Translation: AAH31654.1.
CCDSiCCDS7641.1. [Q14153-1]
RefSeqiNP_055476.3. NM_014661.3. [Q14153-1]
UniGeneiHs.129195.

Genome annotation databases

EnsembliENST00000280780; ENSP00000280780; ENSG00000189319. [Q14153-2]
ENST00000337318; ENSP00000338532; ENSG00000189319. [Q14153-1]
ENST00000392754; ENSP00000376509; ENSG00000189319. [Q14153-1]
GeneIDi9679.
KEGGihsa:9679.
UCSCiuc001lhv.2. human. [Q14153-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50930 mRNA. Translation: BAA09489.2. Different initiation.
AK127343 mRNA. Translation: BAG54488.1.
AL513190, AC068896 Genomic DNA. Translation: CAH70375.1.
AL513190, AC068896 Genomic DNA. Translation: CAH70376.1.
CH471066 Genomic DNA. Translation: EAW49259.1.
CH471066 Genomic DNA. Translation: EAW49260.1.
CH471066 Genomic DNA. Translation: EAW49261.1.
CH471066 Genomic DNA. Translation: EAW49262.1.
BC031654 mRNA. Translation: AAH31654.1.
CCDSiCCDS7641.1. [Q14153-1]
RefSeqiNP_055476.3. NM_014661.3. [Q14153-1]
UniGeneiHs.129195.

3D structure databases

ProteinModelPortaliQ14153.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi115033. 1 interaction.
IntActiQ14153. 2 interactions.
MINTiMINT-3976476.
STRINGi9606.ENSP00000338532.

PTM databases

iPTMnetiQ14153.
PhosphoSiteiQ14153.

Polymorphism and mutation databases

BioMutaiFAM53B.
DMDMi215273981.

Proteomic databases

EPDiQ14153.
MaxQBiQ14153.
PaxDbiQ14153.
PRIDEiQ14153.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000280780; ENSP00000280780; ENSG00000189319. [Q14153-2]
ENST00000337318; ENSP00000338532; ENSG00000189319. [Q14153-1]
ENST00000392754; ENSP00000376509; ENSG00000189319. [Q14153-1]
GeneIDi9679.
KEGGihsa:9679.
UCSCiuc001lhv.2. human. [Q14153-1]

Organism-specific databases

CTDi9679.
GeneCardsiFAM53B.
HGNCiHGNC:28968. FAM53B.
HPAiHPA037751.
HPA037752.
neXtProtiNX_Q14153.
PharmGKBiPA134957918.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IE5U. Eukaryota.
ENOG410YBVC. LUCA.
GeneTreeiENSGT00530000063371.
HOGENOMiHOG000059662.
HOVERGENiHBG051537.
InParanoidiQ14153.
OMAiECLPEKC.
OrthoDBiEOG7H1JKF.
PhylomeDBiQ14153.
TreeFamiTF332095.

Miscellaneous databases

ChiTaRSiFAM53B. human.
GenomeRNAii9679.
NextBioi36351.
PROiQ14153.

Gene expression databases

BgeeiQ14153.
CleanExiHS_FAM53B.
GenevisibleiQ14153. HS.

Family and domain databases

InterProiIPR029356. FAM53.
[Graphical view]
PfamiPF15242. FAM53. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1."
    Nagase T., Seki N., Tanaka A., Ishikawa K., Nomura N.
    DNA Res. 2:167-174(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), TISSUE SPECIFICITY.
    Tissue: Bone marrow.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Hippocampus.
  3. "The DNA sequence and comparative analysis of human chromosome 10."
    Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J.
    , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
    Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Brain and Lung.
  6. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-167, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.

Entry informationi

Entry nameiFA53B_HUMAN
AccessioniPrimary (citable) accession number: Q14153
Secondary accession number(s): D3DRF1
, Q5VUW1, Q5VUW2, Q8N5S6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 25, 2008
Last modified: May 11, 2016
This is version 107 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.