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Q13Z47

- Q13Z47_BURXL

UniProt

Q13Z47 - Q13Z47_BURXL

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene
Bxe_A2328
Organism
Burkholderia xenovorans (strain LB400)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBXEN266265:GJII-2201-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:Bxe_A2328Imported
OrganismiBurkholderia xenovorans (strain LB400)Imported
Taxonomic identifieri266265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001817: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi266265.Bxe_A2328.

Structurei

3D structure databases

ProteinModelPortaliQ13Z47.
SMRiQ13Z47. Positions 706-997.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q13Z47-1 [UniParc]FASTAAdd to Basket

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MNDRLDTYNR KRRFDDTPEP AGTRTSRKQG GRKTAGQASP EALSYVIQEH     50
DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE 100
GEIPLGNYGA GSVIVWDRGT WEPLGGAAEA ARAYAAGKLK FQLHGEKLHG 150
GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESKYDILKKR PGSVLADSAA 200
AVKGAKTAKT AAAKSTAKTA SKAAVATATK ATADPDSASL AKRTGRNGAQ 250
KASSSRADPK RPDIVATRSA QSLRDLAASP SIEGAVPARL PATFKPQLAT 300
LVDGAPPGNE WSYEIKFDGY RVLVRIDRAT KGSAVKVLTR AGNDWTAKFS 350
KQVKAFEQLD IESAWLDGEA VVLNQNGVPN FQALQNAFDS NRPQDIVIYL 400
FDIPFLNGYD LRGVPLEQRR AILRALLEDA DDSVLRFSNN FEFSADDLLR 450
SACDMALEGI IGKRRDSGYM SGRSSAWIKL KCRRRQEFVI GGYSEPSGSR 500
AAFGALLLGV YDGNGKLQYA GRVGTGFDAA LLRSVKKELD AHETRHMPFA 550
AAPRERSRTP VHWVEPVLVA ECNFAEWTSD GIVRQASFVS LRSDKPARQI 600
VKETPRQGAD VQQQTDSVSN DAPTKRAARK TSASAATTSG EGKTRVAKSK 650
TADAKDASTK SRGVEASGAK GSAAKAAATK PTAATAKAAK ATKTSAAKAN 700
TTSAPGEVAG VRVSHPDRVI DRSTGTRKID LVRYYESVAD WMLPHLRDRP 750
VSLVRAPEDI DGELFFQKHS QKLSIPNVTQ HPGLDPGHPP LITVDTLKAL 800
VGAAQMGTVE FHTWNAVVSN IEKPDRMVFD LDPDASLGWE RMIEAAQLTR 850
SLLEELGLAS FCKTSGGKGF HVVVPLAKQA GWDEVKDFSQ AVAQHMAATL 900
PRYFSAKMGA QNRKQKIFVD YLRNNRGSST VAAFSARARP GLGVSVPLAW 950
DEVATTTGGA QWTIENLHER LADLKSDPWA DYAKTRQRIT AAMKKRLDDA 1000
Q 1001
Length:1,001
Mass (Da):108,786
Last modified:August 22, 2006 - v1
Checksum:iC93F40DDE8EC7F7C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000270 Genomic DNA. Translation: ABE30642.1.
RefSeqiYP_558694.1. NC_007951.1.

Genome annotation databases

EnsemblBacteriaiABE30642; ABE30642; Bxe_A2328.
GeneIDi4004661.
KEGGibxe:Bxe_A2328.
PATRICi19329756. VBIBurXen52548_2201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000270 Genomic DNA. Translation: ABE30642.1 .
RefSeqi YP_558694.1. NC_007951.1.

3D structure databases

ProteinModelPortali Q13Z47.
SMRi Q13Z47. Positions 706-997.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 266265.Bxe_A2328.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE30642 ; ABE30642 ; Bxe_A2328 .
GeneIDi 4004661.
KEGGi bxe:Bxe_A2328.
PATRICi 19329756. VBIBurXen52548_2201.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BXEN266265:GJII-2201-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LB400Imported.

Entry informationi

Entry nameiQ13Z47_BURXL
AccessioniPrimary (citable) accession number: Q13Z47
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3