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Q13Z47

- Q13Z47_BURXL

UniProt

Q13Z47 - Q13Z47_BURXL

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Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Bxe_A2328

Organism
Burkholderia xenovorans (strain LB400)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBXEN266265:GJII-2201-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:Bxe_A2328Imported
OrganismiBurkholderia xenovorans (strain LB400)Imported
Taxonomic identifieri266265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000001817: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi266265.Bxe_A2328.

Structurei

3D structure databases

ProteinModelPortaliQ13Z47.
SMRiQ13Z47. Positions 706-997.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSACDMAL.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q13Z47-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNDRLDTYNR KRRFDDTPEP AGTRTSRKQG GRKTAGQASP EALSYVIQEH
60 70 80 90 100
DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE
110 120 130 140 150
GEIPLGNYGA GSVIVWDRGT WEPLGGAAEA ARAYAAGKLK FQLHGEKLHG
160 170 180 190 200
GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESKYDILKKR PGSVLADSAA
210 220 230 240 250
AVKGAKTAKT AAAKSTAKTA SKAAVATATK ATADPDSASL AKRTGRNGAQ
260 270 280 290 300
KASSSRADPK RPDIVATRSA QSLRDLAASP SIEGAVPARL PATFKPQLAT
310 320 330 340 350
LVDGAPPGNE WSYEIKFDGY RVLVRIDRAT KGSAVKVLTR AGNDWTAKFS
360 370 380 390 400
KQVKAFEQLD IESAWLDGEA VVLNQNGVPN FQALQNAFDS NRPQDIVIYL
410 420 430 440 450
FDIPFLNGYD LRGVPLEQRR AILRALLEDA DDSVLRFSNN FEFSADDLLR
460 470 480 490 500
SACDMALEGI IGKRRDSGYM SGRSSAWIKL KCRRRQEFVI GGYSEPSGSR
510 520 530 540 550
AAFGALLLGV YDGNGKLQYA GRVGTGFDAA LLRSVKKELD AHETRHMPFA
560 570 580 590 600
AAPRERSRTP VHWVEPVLVA ECNFAEWTSD GIVRQASFVS LRSDKPARQI
610 620 630 640 650
VKETPRQGAD VQQQTDSVSN DAPTKRAARK TSASAATTSG EGKTRVAKSK
660 670 680 690 700
TADAKDASTK SRGVEASGAK GSAAKAAATK PTAATAKAAK ATKTSAAKAN
710 720 730 740 750
TTSAPGEVAG VRVSHPDRVI DRSTGTRKID LVRYYESVAD WMLPHLRDRP
760 770 780 790 800
VSLVRAPEDI DGELFFQKHS QKLSIPNVTQ HPGLDPGHPP LITVDTLKAL
810 820 830 840 850
VGAAQMGTVE FHTWNAVVSN IEKPDRMVFD LDPDASLGWE RMIEAAQLTR
860 870 880 890 900
SLLEELGLAS FCKTSGGKGF HVVVPLAKQA GWDEVKDFSQ AVAQHMAATL
910 920 930 940 950
PRYFSAKMGA QNRKQKIFVD YLRNNRGSST VAAFSARARP GLGVSVPLAW
960 970 980 990 1000
DEVATTTGGA QWTIENLHER LADLKSDPWA DYAKTRQRIT AAMKKRLDDA

Q
Length:1,001
Mass (Da):108,786
Last modified:August 22, 2006 - v1
Checksum:iC93F40DDE8EC7F7C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000270 Genomic DNA. Translation: ABE30642.1.
RefSeqiWP_011488273.1. NC_007951.1.
YP_558694.1. NC_007951.1.

Genome annotation databases

EnsemblBacteriaiABE30642; ABE30642; Bxe_A2328.
GeneIDi4004661.
KEGGibxe:Bxe_A2328.
PATRICi19329756. VBIBurXen52548_2201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000270 Genomic DNA. Translation: ABE30642.1 .
RefSeqi WP_011488273.1. NC_007951.1.
YP_558694.1. NC_007951.1.

3D structure databases

ProteinModelPortali Q13Z47.
SMRi Q13Z47. Positions 706-997.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 266265.Bxe_A2328.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE30642 ; ABE30642 ; Bxe_A2328 .
GeneIDi 4004661.
KEGGi bxe:Bxe_A2328.
PATRICi 19329756. VBIBurXen52548_2201.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SACDMAL.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BXEN266265:GJII-2201-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LB400Imported.

Entry informationi

Entry nameiQ13Z47_BURXL
AccessioniPrimary (citable) accession number: Q13Z47
Entry historyi
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: October 29, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3