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Q13Z47

- Q13Z47_BURXL

UniProt

Q13Z47 - Q13Z47_BURXL

Protein
Submitted name:

ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module

Gene

Bxe_A2328

Organism
Burkholderia xenovorans (strain LB400)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBXEN266265:GJII-2201-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase moduleImported (EC:6.5.1.1Imported)
    Gene namesi
    ORF Names:Bxe_A2328Imported
    OrganismiBurkholderia xenovorans (strain LB400)Imported
    Taxonomic identifieri266265 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000001817: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi266265.Bxe_A2328.

    Structurei

    3D structure databases

    ProteinModelPortaliQ13Z47.
    SMRiQ13Z47. Positions 706-997.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q13Z47-1 [UniParc]FASTAAdd to Basket

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    MNDRLDTYNR KRRFDDTPEP AGTRTSRKQG GRKTAGQASP EALSYVIQEH     50
    DARRLHYDFR LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE 100
    GEIPLGNYGA GSVIVWDRGT WEPLGGAAEA ARAYAAGKLK FQLHGEKLHG 150
    GWTLVRSHMR GSGDKEQWLL IKERDDEARD ESKYDILKKR PGSVLADSAA 200
    AVKGAKTAKT AAAKSTAKTA SKAAVATATK ATADPDSASL AKRTGRNGAQ 250
    KASSSRADPK RPDIVATRSA QSLRDLAASP SIEGAVPARL PATFKPQLAT 300
    LVDGAPPGNE WSYEIKFDGY RVLVRIDRAT KGSAVKVLTR AGNDWTAKFS 350
    KQVKAFEQLD IESAWLDGEA VVLNQNGVPN FQALQNAFDS NRPQDIVIYL 400
    FDIPFLNGYD LRGVPLEQRR AILRALLEDA DDSVLRFSNN FEFSADDLLR 450
    SACDMALEGI IGKRRDSGYM SGRSSAWIKL KCRRRQEFVI GGYSEPSGSR 500
    AAFGALLLGV YDGNGKLQYA GRVGTGFDAA LLRSVKKELD AHETRHMPFA 550
    AAPRERSRTP VHWVEPVLVA ECNFAEWTSD GIVRQASFVS LRSDKPARQI 600
    VKETPRQGAD VQQQTDSVSN DAPTKRAARK TSASAATTSG EGKTRVAKSK 650
    TADAKDASTK SRGVEASGAK GSAAKAAATK PTAATAKAAK ATKTSAAKAN 700
    TTSAPGEVAG VRVSHPDRVI DRSTGTRKID LVRYYESVAD WMLPHLRDRP 750
    VSLVRAPEDI DGELFFQKHS QKLSIPNVTQ HPGLDPGHPP LITVDTLKAL 800
    VGAAQMGTVE FHTWNAVVSN IEKPDRMVFD LDPDASLGWE RMIEAAQLTR 850
    SLLEELGLAS FCKTSGGKGF HVVVPLAKQA GWDEVKDFSQ AVAQHMAATL 900
    PRYFSAKMGA QNRKQKIFVD YLRNNRGSST VAAFSARARP GLGVSVPLAW 950
    DEVATTTGGA QWTIENLHER LADLKSDPWA DYAKTRQRIT AAMKKRLDDA 1000
    Q 1001
    Length:1,001
    Mass (Da):108,786
    Last modified:August 22, 2006 - v1
    Checksum:iC93F40DDE8EC7F7C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000270 Genomic DNA. Translation: ABE30642.1.
    RefSeqiYP_558694.1. NC_007951.1.

    Genome annotation databases

    EnsemblBacteriaiABE30642; ABE30642; Bxe_A2328.
    GeneIDi4004661.
    KEGGibxe:Bxe_A2328.
    PATRICi19329756. VBIBurXen52548_2201.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000270 Genomic DNA. Translation: ABE30642.1 .
    RefSeqi YP_558694.1. NC_007951.1.

    3D structure databases

    ProteinModelPortali Q13Z47.
    SMRi Q13Z47. Positions 706-997.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 266265.Bxe_A2328.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE30642 ; ABE30642 ; Bxe_A2328 .
    GeneIDi 4004661.
    KEGGi bxe:Bxe_A2328.
    PATRICi 19329756. VBIBurXen52548_2201.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BXEN266265:GJII-2201-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LB400Imported.

    Entry informationi

    Entry nameiQ13Z47_BURXL
    AccessioniPrimary (citable) accession number: Q13Z47
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 22, 2006
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3