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Q13SZ2 (Q13SZ2_BURXL) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor FliA HAMAP-Rule MF_00962
Alternative name(s):
RNA polymerase sigma factor for flagellar operon HAMAP-Rule MF_00962
Sigma F HAMAP-Rule MF_00962
Sigma-28 HAMAP-Rule MF_00962
Gene names
Name:fliA HAMAP-Rule MF_00962
ORF Names:Bxe_A0134 EMBL ABE32797.1
OrganismBurkholderia xenovorans (strain LB400) [Complete proteome] [HAMAP] EMBL ABE32797.1
Taxonomic identifier266265 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia

Protein attributes

Sequence length244 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes By similarity. HAMAP-Rule MF_00962

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00962.

Sequence similarities

Belongs to the sigma-70 factor family. FliA subfamily. HAMAP-Rule MF_00962

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

DNA binding204 – 22320H-T-H motif By similarity HAMAP-Rule MF_00962
Region13 – 8573Sigma-70 factor domain-2 By similarity HAMAP-Rule MF_00962
Region93 – 16371Sigma-70 factor domain-3 By similarity HAMAP-Rule MF_00962
Region182 – 23049Sigma-70 factor domain-4 By similarity HAMAP-Rule MF_00962
Motif40 – 434Interaction with polymerase core subunit RpoC By similarity HAMAP-Rule MF_00962

Sequences

Sequence LengthMass (Da)Tools
Q13SZ2 [UniParc].

Last modified August 22, 2006. Version 1.
Checksum: 97D04A3074553A33

FASTA24427,811
        10         20         30         40         50         60 
MYNAQGKISQ ADVLTKYAPL VRRLGLQLVA KMPASVDLDD LIQAGMIGLL DAASRYKEDQ 

        70         80         90        100        110        120 
GAQFETYASQ RIRGAMLDEL RSNDWLPRSL RRTSREVETA VHKVEQNLGR SASETEIAEH 

       130        140        150        160        170        180 
LQMPLDEYQS MLQDLHGSQL IYYEDFDRSA DDEPFLDRYC VDHSDPLSAL LDDSLRSALV 

       190        200        210        220        230        240 
EAIDRLPERE KLLMSLYYER GMNLREIGAV MEVSESRVCQ LHSQAVARLR TRLREMAWAN 


AEAT 

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000270 Genomic DNA. Translation: ABE32797.1.
RefSeqYP_560849.1. NC_007951.1.

3D structure databases

ProteinModelPortalQ13SZ2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING266265.Bxe_A0134.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE32797; ABE32797; Bxe_A0134.
GeneID4006293.
KEGGbxe:Bxe_A0134.
PATRIC19334402. VBIBurXen52548_4478.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1191.
HOGENOMHOG000270271.
KOK02405.
OMATLYYYEG.
OrthoDBEOG661H9F.
ProtClustDBPRK06986.

Enzyme and pathway databases

BioCycBXEN266265:GJII-4432-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 2 hits.
HAMAPMF_00962. Sigma70_FliA.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR012845. RNA_pol_sigma_FliA_WhiG.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR028617. Sigma70_FliA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02479. FliA_WhiG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ13SZ2_BURXL
AccessionPrimary (citable) accession number: Q13SZ2
Entry history
Integrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: April 16, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)