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Q13SZ2

- Q13SZ2_BURXL

UniProt

Q13SZ2 - Q13SZ2_BURXL

Protein

RNA polymerase sigma factor FliA

Gene

fliA

Organism
Burkholderia xenovorans (strain LB400)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (22 Aug 2006)
      Previous versions | rss
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    Functioni

    Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation
    Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes.UniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi204 – 22320H-T-H motifUniRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: InterPro
    3. sequence-specific DNA binding transcription factor activity Source: InterPro
    4. sigma factor activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription initiation from bacterial-type RNA polymerase promoter Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Sigma factorUniRule annotationSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciBXEN266265:GJII-4432-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    RNA polymerase sigma factor FliAUniRule annotation
    Alternative name(s):
    RNA polymerase sigma factor for flagellar operonUniRule annotation
    Sigma FUniRule annotation
    Sigma-28UniRule annotation
    Gene namesi
    Name:fliAUniRule annotation
    ORF Names:Bxe_A0134Imported
    OrganismiBurkholderia xenovorans (strain LB400)Imported
    Taxonomic identifieri266265 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
    ProteomesiUP000001817: Chromosome 1

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi266265.Bxe_A0134.

    Structurei

    3D structure databases

    ProteinModelPortaliQ13SZ2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni13 – 8573Sigma-70 factor domain-2UniRule annotationAdd
    BLAST
    Regioni93 – 16371Sigma-70 factor domain-3UniRule annotationAdd
    BLAST
    Regioni182 – 23049Sigma-70 factor domain-4UniRule annotationAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi40 – 434Interaction with polymerase core subunit RpoCUniRule annotation

    Sequence similaritiesi

    Belongs to the sigma-70 factor family. FliA subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1191.
    HOGENOMiHOG000270271.
    KOiK02405.
    OMAiFATQRIR.
    OrthoDBiEOG661H9F.

    Family and domain databases

    Gene3Di1.10.10.10. 2 hits.
    HAMAPiMF_00962. Sigma70_FliA.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR000943. RNA_pol_sigma70.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007624. RNA_pol_sigma70_r3.
    IPR007630. RNA_pol_sigma70_r4.
    IPR012845. RNA_pol_sigma_FliA_WhiG.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR028617. Sigma70_FliA.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF04539. Sigma70_r3. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view]
    PRINTSiPR00046. SIGMA70FCT.
    SUPFAMiSSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02479. FliA_WhiG. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEiPS00715. SIGMA70_1. 1 hit.
    PS00716. SIGMA70_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q13SZ2-1 [UniParc]FASTAAdd to Basket

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    MYNAQGKISQ ADVLTKYAPL VRRLGLQLVA KMPASVDLDD LIQAGMIGLL    50
    DAASRYKEDQ GAQFETYASQ RIRGAMLDEL RSNDWLPRSL RRTSREVETA 100
    VHKVEQNLGR SASETEIAEH LQMPLDEYQS MLQDLHGSQL IYYEDFDRSA 150
    DDEPFLDRYC VDHSDPLSAL LDDSLRSALV EAIDRLPERE KLLMSLYYER 200
    GMNLREIGAV MEVSESRVCQ LHSQAVARLR TRLREMAWAN AEAT 244
    Length:244
    Mass (Da):27,811
    Last modified:August 22, 2006 - v1
    Checksum:i97D04A3074553A33
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000270 Genomic DNA. Translation: ABE32797.1.
    RefSeqiYP_560849.1. NC_007951.1.

    Genome annotation databases

    EnsemblBacteriaiABE32797; ABE32797; Bxe_A0134.
    GeneIDi4006293.
    KEGGibxe:Bxe_A0134.
    PATRICi19334402. VBIBurXen52548_4478.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000270 Genomic DNA. Translation: ABE32797.1 .
    RefSeqi YP_560849.1. NC_007951.1.

    3D structure databases

    ProteinModelPortali Q13SZ2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 266265.Bxe_A0134.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE32797 ; ABE32797 ; Bxe_A0134 .
    GeneIDi 4006293.
    KEGGi bxe:Bxe_A0134.
    PATRICi 19334402. VBIBurXen52548_4478.

    Phylogenomic databases

    eggNOGi COG1191.
    HOGENOMi HOG000270271.
    KOi K02405.
    OMAi FATQRIR.
    OrthoDBi EOG661H9F.

    Enzyme and pathway databases

    BioCyci BXEN266265:GJII-4432-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 2 hits.
    HAMAPi MF_00962. Sigma70_FliA.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR000943. RNA_pol_sigma70.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007624. RNA_pol_sigma70_r3.
    IPR007630. RNA_pol_sigma70_r4.
    IPR012845. RNA_pol_sigma_FliA_WhiG.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR028617. Sigma70_FliA.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF04539. Sigma70_r3. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view ]
    PRINTSi PR00046. SIGMA70FCT.
    SUPFAMi SSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02479. FliA_WhiG. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    PROSITEi PS00715. SIGMA70_1. 1 hit.
    PS00716. SIGMA70_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: LB400Imported.

    Entry informationi

    Entry nameiQ13SZ2_BURXL
    AccessioniPrimary (citable) accession number: Q13SZ2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 22, 2006
    Last sequence update: August 22, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3