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Protein

RNA polymerase sigma factor FliA

Gene

fliA

Organism
Paraburkholderia xenovorans (strain LB400)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi204 – 223H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor FliAUniRule annotation
Alternative name(s):
RNA polymerase sigma factor for flagellar operonUniRule annotation
Sigma FUniRule annotation
Sigma-28UniRule annotation
Gene namesi
Name:fliAUniRule annotation
ORF Names:Bxe_A0134Imported
OrganismiParaburkholderia xenovorans (strain LB400)Imported
Taxonomic identifieri266265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001817 Componenti: Chromosome 1

Subcellular locationi

Q13SZ2:
  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi266265.Bxe_A0134.

Structurei

3D structure databases

ProteinModelPortaliQ13SZ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini40 – 53RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini203 – 229RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni13 – 85Sigma-70 factor domain-2UniRule annotationAdd BLAST73
Regioni93 – 163Sigma-70 factor domain-3UniRule annotationAdd BLAST71
Regioni182 – 230Sigma-70 factor domain-4UniRule annotationAdd BLAST49

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi40 – 43Interaction with polymerase core subunit RpoCUniRule annotation4

Sequence similaritiesi

Belongs to the sigma-70 factor family. FliA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DN4. Bacteria.
COG1191. LUCA.
HOGENOMiHOG000270271.
KOiK02405.
OMAiIKFETYA.
OrthoDBiPOG091H02NW.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
HAMAPiMF_00962. Sigma70_FliA. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR012845. RNA_pol_sigma_FliA_WhiG.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR028617. Sigma70_FliA.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02479. FliA_WhiG. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q13SZ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYNAQGKISQ ADVLTKYAPL VRRLGLQLVA KMPASVDLDD LIQAGMIGLL
60 70 80 90 100
DAASRYKEDQ GAQFETYASQ RIRGAMLDEL RSNDWLPRSL RRTSREVETA
110 120 130 140 150
VHKVEQNLGR SASETEIAEH LQMPLDEYQS MLQDLHGSQL IYYEDFDRSA
160 170 180 190 200
DDEPFLDRYC VDHSDPLSAL LDDSLRSALV EAIDRLPERE KLLMSLYYER
210 220 230 240
GMNLREIGAV MEVSESRVCQ LHSQAVARLR TRLREMAWAN AEAT
Length:244
Mass (Da):27,811
Last modified:August 22, 2006 - v1
Checksum:i97D04A3074553A33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000270 Genomic DNA. Translation: ABE32797.1.
RefSeqiWP_007179960.1. NZ_CP008760.1.

Genome annotation databases

EnsemblBacteriaiABE32797; ABE32797; Bxe_A0134.
GeneIDi4006293.
KEGGibxb:DR64_2308.
bxe:Bxe_A0134.

Similar proteinsi

Entry informationi

Entry nameiQ13SZ2_PARXL
AccessioniPrimary (citable) accession number: Q13SZ2
Entry historyiIntegrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: October 25, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported