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Protein

RNA polymerase sigma factor FliA

Gene

fliA

Organism
Paraburkholderia xenovorans (strain LB400)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi204 – 223H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor FliAUniRule annotation
Alternative name(s):
RNA polymerase sigma factor for flagellar operonUniRule annotation
Sigma FUniRule annotation
Sigma-28UniRule annotation
Gene namesi
Name:fliAUniRule annotation
ORF Names:Bxe_A0134Imported
OrganismiParaburkholderia xenovorans (strain LB400)Imported
Taxonomic identifieri266265 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeParaburkholderia
Proteomesi
  • UP000001817 Componenti: Chromosome 1

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi266265.Bxe_A0134

Structurei

3D structure databases

ProteinModelPortaliQ13SZ2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini40 – 53RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini203 – 229RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni13 – 85Sigma-70 factor domain-2UniRule annotationAdd BLAST73
Regioni93 – 163Sigma-70 factor domain-3UniRule annotationAdd BLAST71
Regioni182 – 230Sigma-70 factor domain-4UniRule annotationAdd BLAST49

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi40 – 43Interaction with polymerase core subunit RpoCUniRule annotation4

Sequence similaritiesi

Belongs to the sigma-70 factor family. FliA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DN4 Bacteria
COG1191 LUCA
HOGENOMiHOG000270271
KOiK02405
OMAiIKFETYA
OrthoDBiPOG091H02NW

Family and domain databases

HAMAPiMF_00962 Sigma70_FliA, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR012845 RNA_pol_sigma_FliA_WhiG
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR028617 Sigma70_FliA
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PIRSFiPIRSF000770 RNA_pol_sigma-SigE/K, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02479 FliA_WhiG, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q13SZ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYNAQGKISQ ADVLTKYAPL VRRLGLQLVA KMPASVDLDD LIQAGMIGLL
60 70 80 90 100
DAASRYKEDQ GAQFETYASQ RIRGAMLDEL RSNDWLPRSL RRTSREVETA
110 120 130 140 150
VHKVEQNLGR SASETEIAEH LQMPLDEYQS MLQDLHGSQL IYYEDFDRSA
160 170 180 190 200
DDEPFLDRYC VDHSDPLSAL LDDSLRSALV EAIDRLPERE KLLMSLYYER
210 220 230 240
GMNLREIGAV MEVSESRVCQ LHSQAVARLR TRLREMAWAN AEAT
Length:244
Mass (Da):27,811
Last modified:August 22, 2006 - v1
Checksum:i97D04A3074553A33
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000270 Genomic DNA Translation: ABE32797.1
RefSeqiWP_007179960.1, NZ_CP008760.1

Genome annotation databases

EnsemblBacteriaiABE32797; ABE32797; Bxe_A0134
GeneIDi4006293
KEGGibxb:DR64_2308
bxe:Bxe_A0134

Similar proteinsi

Entry informationi

Entry nameiQ13SZ2_PARXL
AccessioniPrimary (citable) accession number: Q13SZ2
Entry historyiIntegrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: June 20, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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