Q13SZ2 (Q13SZ2_BURXL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Ordered Locus Names:	Bxeno_A4259
ORF Names:	Bxe_A0134 EMBL ABE32797.1

Organism

Burkholderia xenovorans (strain LB400) [Complete proteome] [HAMAP]

Taxonomic identifier

266265 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia xenovorans

Protein attributes

Sequence length	244 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding RuleBase RU000715 SAAS SAAS007624
Molecular function	Sigma factor SAAS SAAS007624 RuleBase RU000715
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q13SZ2 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 97D04A3074553A33	FASTA	244	27,811
	10 20 30 40 50 60 MYNAQGKISQ ADVLTKYAPL VRRLGLQLVA KMPASVDLDD LIQAGMIGLL DAASRYKEDQ 70 80 90 100 110 120 GAQFETYASQ RIRGAMLDEL RSNDWLPRSL RRTSREVETA VHKVEQNLGR SASETEIAEH 130 140 150 160 170 180 LQMPLDEYQS MLQDLHGSQL IYYEDFDRSA DDEPFLDRYC VDHSDPLSAL LDDSLRSALV 190 200 210 220 230 240 EAIDRLPERE KLLMSLYYER GMNLREIGAV MEVSESRVCQ LHSQAVARLR TRLREMAWAN AEAT

References

[1]

"Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility." Chain P.S.G., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L., Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M., Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A., Marx C.J., Parnell J.J. , Ramette A., Richardson P., Seeger M., Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B., Tiedje J.M. Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: LB400.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000270 Genomic DNA. Translation: ABE32797.1.
RefSeq	YP_560849.1. NC_007951.1.
3D structure databases
ProteinModelPortal	Q13SZ2.
ModBase	Search...
Protein-protein interaction databases
STRING	266265.Bxe_A0134.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE32797; ABE32797; Bxe_A0134.
GeneID	4006293.
KEGG	bxe:Bxe_A0134.
PATRIC	19334402. VBIBurXen52548_4478.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1191.
HOGENOM	HOG000270271.
KO	K02405.
OMA	TYAITRI.
ProtClustDB	PRK06986.
Enzyme and pathway databases
BioCyc	BXEN266265:GJII-4432-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR012845. RNA_pol_sigma_FliA_WhiG. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02479. FliA_WhiG. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q13SZ2_BURXL

Accession

Primary (citable) accession number: Q13SZ2

Entry history

Integrated into UniProtKB/TrEMBL:	August 22, 2006
Last sequence update:	August 22, 2006
Last modified:	May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)