Reviewed, UniProtKB/Swiss-Prot Q13R51 (SELD_BURXL)

Names and origin

Protein names

Recommended name:
    Selenide, water dikinase
    EC=2.7.9.3
Alternative name(s):
    Selenophosphate synthetase
    Selenium donor protein

Gene names

Name:	selD
Ordered Locus Names:	Bxeno_B0470
ORF Names:	Bxe_B2555

Organism

Burkholderia xenovorans (strain LB400) [Complete proteome] [HAMAP]

Taxonomic identifier

266265 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia

Protein attributes

Sequence length	354 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity.
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity.
Sequence similarities	Belongs to the selenophosphate synthetase 1 family. Class I subfamily.

Ontologies

Keywords
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP magnesium ion binding Inferred from electronic annotation. Source: HAMAP selenide, water dikinase activity Inferred from electronic annotation. Source: HAMAP selenium binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 354	354	Selenide, water dikinase HAMAP MF_00625		PRO_1000051594
Regions
	Nucleotide binding	236 – 242	7	ATP Potential
Sites
	Active site	23	1	Potential
	Site	26	1	Important for catalytic activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q13R51-1 [UniParc]. Last modified August 22, 2006. Version 1. Checksum: 4F35E7ECD832B8C2	FASTA	354	36,307
	10 20 30 40 50 60 MTDTSVPTST SPRLTSLSHG GGCGCKIAPG LLADLLKRSA PLPFFPDLLV GNDTADDAAV 70 80 90 100 110 120 YKLNDEQAIV ATTDFFMPIV DDPFDFGRIA ATNALSDVYA MGGKPLMALA IVGMPINVLP 130 140 150 160 170 180 HDVIAAVLKG GESVCAEAGI PLAGGHSIDS VEPIYGLVAI GVVDPKRVKR NAGAQAGDVL 190 200 210 220 230 240 ILGKPLGVGI LSAALKKDRL DAAGYAAMIA ATTKLNRPGA ELSRLDGVHA LTDITGFGLL 250 260 270 280 290 300 GHTLELARGS NLTARVRYAD LPWLPDVVGL AEAGIFTGAS GRNWDAYGKS IGLPASLPAT 310 320 330 340 350 ARTLLTDPQT SGGLLVSCAP QAVDEVLALF RADGFGEACV IGEMVSGEGR VEVV

References

[1]

"Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility." Chain P.S.G., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L., Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M., Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A., Marx C.J., Parnell J.J. , Ramette A., Richardson P., Seeger M., Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B., Tiedje J.M. Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006) [PubMed: 17030797] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000271 Genomic DNA. Translation: ABE33438.1.
RefSeq	YP_552788.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	4006949.
GenomeReviews	Gene locus Bxeno_B0470 in contig CP000271_GR.
KEGG	bxe:Bxe_B2555.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q13R51.
OMA	MMAIAIL.
Enzyme and pathway databases
BioCyc	BXEN266265:BXE_B2555-MON.
Family and domain databases
HAMAP	MF_00625. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR004536. SelD. [Graphical view]
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
TIGRFAMs	TIGR00476. selD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_BURXL

Accession

Primary (citable) accession number: Q13R51

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	August 22, 2006
Last modified:	November 3, 2009
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)