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Q13DY9 (Q13DY9_RHOPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.39 EMBL ABE37700.1
Gene names
Ordered Locus Names:RPD_0462 EMBL ABE37700.1
OrganismRhodopseudomonas palustris (strain BisB5) [Complete proteome] [HAMAP] EMBL ABE37700.1
Taxonomic identifier316057 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length432 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ABE37700.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q13DY9 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 4177FD2ADB0C5F2C

FASTA43246,552
        10         20         30         40         50         60 
MTPDDIAGFY AKRSDLNLDD YIELDFDFEC AGDPREAAAH LCSEQSTAQW RRVGVDEDFR 

        70         80         90        100        110        120 
PRFAAKVLEL HAEPRPSGFS TPVECAVRGE VHACRVTIAH PHGNFGPKIP NLLSAVCGEG 

       130        140        150        160        170        180 
VFFSPGIPLI RLQDIRFPDS YLAAFAGPQF GVAGLRERLK AFDRPIFFGV IKPNIGLSAE 

       190        200        210        220        230        240 
PFAELGYQSW LGGLDIAKDD EMLADVDWCP LAERAALLGD ACRRAEAETG VPKIYLANIT 

       250        260        270        280        290        300 
DEVDRLIELH DLAVSNGAGA LLVNAMPVGL SAVRMLRKHA TVPLIAHFPF IAAFSRLANY 

       310        320        330        340        350        360 
GIHSRVMTRL QRLAGFDVVI MPGFGPRMMT PEHEVMDCVR ACLEPMGPIK PCLPVPGGSD 

       370        380        390        400        410        420 
SAATLESVYR KVGCADFGFV PGRGVFGHPM GPAAGAASIR QAWDAIASGI AVSDHAARHP 

       430 
ELAAALRAFG GR 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB5 EMBL ABE37700.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000283 Genomic DNA. Translation: ABE37700.1.
RefSeqYP_567601.1. NC_007958.1.

3D structure databases

ProteinModelPortalQ13DY9.
SMRQ13DY9. Positions 1-429.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316057.RPD_0462.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE37700; ABE37700; RPD_0462.
GeneID4020929.
KEGGrpd:RPD_0462.
PATRIC23275775. VBIRhoPal120395_0475.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1850.
HOGENOMHOG000230831.
KOK01601.
OMAFECAGDP.
OrthoDBEOG62K1SK.

Enzyme and pathway databases

BioCycRPAL316057:GHDC-475-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 2 hits.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ13DY9_RHOPS
AccessionPrimary (citable) accession number: Q13DY9
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 14, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)