Q13DY9 (Q13DY9_RHOPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit EMBL ABE37700.1
EC=4.1.1.39 EMBL ABE37700.1

Gene names

Ordered Locus Names:

RPD_0462

Organism

Rhodopseudomonas palustris (strain BisB5) [Complete proteome] [HAMAP] EMBL ABE37700.1

Taxonomic identifier

316057 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas › Rhodopseudomonas palustris

Protein attributes

Sequence length	432 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
Molecular function	Lyase EMBL ABE37700.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	carbon fixation Inferred from electronic annotation. Source: InterPro
Molecular_function	magnesium ion binding Inferred from electronic annotation. Source: InterPro ribulose-bisphosphate carboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q13DY9 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: 4177FD2ADB0C5F2C	FASTA	432	46,552
	10 20 30 40 50 60 MTPDDIAGFY AKRSDLNLDD YIELDFDFEC AGDPREAAAH LCSEQSTAQW RRVGVDEDFR 70 80 90 100 110 120 PRFAAKVLEL HAEPRPSGFS TPVECAVRGE VHACRVTIAH PHGNFGPKIP NLLSAVCGEG 130 140 150 160 170 180 VFFSPGIPLI RLQDIRFPDS YLAAFAGPQF GVAGLRERLK AFDRPIFFGV IKPNIGLSAE 190 200 210 220 230 240 PFAELGYQSW LGGLDIAKDD EMLADVDWCP LAERAALLGD ACRRAEAETG VPKIYLANIT 250 260 270 280 290 300 DEVDRLIELH DLAVSNGAGA LLVNAMPVGL SAVRMLRKHA TVPLIAHFPF IAAFSRLANY 310 320 330 340 350 360 GIHSRVMTRL QRLAGFDVVI MPGFGPRMMT PEHEVMDCVR ACLEPMGPIK PCLPVPGGSD 370 380 390 400 410 420 SAATLESVYR KVGCADFGFV PGRGVFGHPM GPAAGAASIR QAWDAIASGI AVSDHAARHP 430 ELAAALRAFG GR

References

[1]

"Complete sequence of Rhodopseudomonas palustris BisB5." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BisB5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000283 Genomic DNA. Translation: ABE37700.1.
RefSeq	YP_567601.1. NC_007958.1.
3D structure databases
ProteinModelPortal	Q13DY9.
SMR	Q13DY9. Positions 1-429.
ModBase	Search...
Protein-protein interaction databases
STRING	316057.RPD_0462.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE37700; ABE37700; RPD_0462.
GeneID	4020929.
KEGG	rpd:RPD_0462.
PATRIC	23275775. VBIRhoPal120395_0475.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1850.
HOGENOM	HOG000230831.
KO	K01601.
OMA	NITDEVD.
ProtClustDB	CLSK637929.
Enzyme and pathway databases
BioCyc	RPAL316057:GHDC-475-MONOMER.
Family and domain databases
Gene3D	3.20.20.110. 1 hit. 3.30.70.150. 1 hit.
InterPro	IPR000685. RuBisCO_lsu_C. IPR017443. RuBisCO_lsu_fd_N. IPR017444. RuBisCO_lsu_N. [Graphical view]
Pfam	PF00016. RuBisCO_large. 2 hits. PF02788. RuBisCO_large_N. 1 hit. [Graphical view]
SUPFAM	SSF51649. RuBisCO_large. 1 hit. SSF54966. RuBisCO_large. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q13DY9_RHOPS

Accession

Primary (citable) accession number: Q13DY9

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	May 29, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)