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Q13D08

- Q13D08_RHOPS

UniProt

Q13D08 - Q13D08_RHOPS

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Protein
Submitted name: ATP dependent DNA ligase
Gene
RPD_0793
Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-813-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RPD_0793Imported
OrganismiRhodopseudomonas palustris (strain BisB5)Imported
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001818: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316057.RPD_0793.

Structurei

3D structure databases

ProteinModelPortaliQ13D08.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q13D08-1 [UniParc]FASTAAdd to Basket

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MNRFAELLDR LAYEPGRNNK LRLITNYFRA TEDPDRGYAL AALTGALSFR    50
HAKPGLIREL IAARTDPVLF GLSYDYVGDL SETVALMWPT PRNTAVSTPA 100
GGASSPPPGS ASSPPPCGEG SGVGGHSGTP SSWHPHPNPL PQAGEGARSA 150
WGEDRDSELS AATSPGHNNP PPPSLTEIVT TLHSLGKAEL PAQLTRWLDE 200
LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHD VELMWPGLDA 250
PYLDLFAWLE GRGPQPVNRD PAPFRPVMLA HALEDTDFAA MNAADYIAEW 300
KWDGIRVQAV SGVGDDGDTI VRLYSRSGED ITRSFPDLLP SLRLPGAIDG 350
ELLVLRESRV QSFNVLQQRL NRKSVTPKLI KEYPIHLRAY DLLGEGDDDL 400
RTLTFAERRA RLEAFVARLD EPKIDLSPMV TFADWDDLHA ARRDPASAGA 450
GLDADAVEGV MLKRRDAPYL PGRPKGQWWK WKHDPHIIDA VLMYAQRGHG 500
KRSSYYSDYT FGVWTAGDGG DQLVPVGKAY FGFTDEELLQ IDRFVRRNTT 550
EKFGPVRHVV HEPDQGLVLE VAFEGLQRSP RHKSGVAMRF PRISRLRWDK 600
PPRDADRLET LERMLKADGA IPSAAPARGH 630
Length:630
Mass (Da):69,343
Last modified:October 31, 2006 - v1
Checksum:iC0A0781EE2AB87E7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE38031.1.
RefSeqiWP_011501218.1. NC_007958.1.
YP_567932.1. NC_007958.1.

Genome annotation databases

EnsemblBacteriaiABE38031; ABE38031; RPD_0793.
GeneIDi4021267.
KEGGirpd:RPD_0793.
PATRICi23276470. VBIRhoPal120395_0818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE38031.1 .
RefSeqi WP_011501218.1. NC_007958.1.
YP_567932.1. NC_007958.1.

3D structure databases

ProteinModelPortali Q13D08.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316057.RPD_0793.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE38031 ; ABE38031 ; RPD_0793 .
GeneIDi 4021267.
KEGGi rpd:RPD_0793.
PATRICi 23276470. VBIRhoPal120395_0818.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci RPAL316057:GHDC-813-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB5Imported.

Entry informationi

Entry nameiQ13D08_RHOPS
AccessioniPrimary (citable) accession number: Q13D08
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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