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Q13D08

- Q13D08_RHOPS

UniProt

Q13D08 - Q13D08_RHOPS

Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPD_0793

Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (31 Oct 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciRPAL316057:GHDC-813-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:RPD_0793Imported
    OrganismiRhodopseudomonas palustris (strain BisB5)Imported
    Taxonomic identifieri316057 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
    ProteomesiUP000001818: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi316057.RPD_0793.

    Structurei

    3D structure databases

    ProteinModelPortaliQ13D08.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q13D08-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNRFAELLDR LAYEPGRNNK LRLITNYFRA TEDPDRGYAL AALTGALSFR    50
    HAKPGLIREL IAARTDPVLF GLSYDYVGDL SETVALMWPT PRNTAVSTPA 100
    GGASSPPPGS ASSPPPCGEG SGVGGHSGTP SSWHPHPNPL PQAGEGARSA 150
    WGEDRDSELS AATSPGHNNP PPPSLTEIVT TLHSLGKAEL PAQLTRWLDE 200
    LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHD VELMWPGLDA 250
    PYLDLFAWLE GRGPQPVNRD PAPFRPVMLA HALEDTDFAA MNAADYIAEW 300
    KWDGIRVQAV SGVGDDGDTI VRLYSRSGED ITRSFPDLLP SLRLPGAIDG 350
    ELLVLRESRV QSFNVLQQRL NRKSVTPKLI KEYPIHLRAY DLLGEGDDDL 400
    RTLTFAERRA RLEAFVARLD EPKIDLSPMV TFADWDDLHA ARRDPASAGA 450
    GLDADAVEGV MLKRRDAPYL PGRPKGQWWK WKHDPHIIDA VLMYAQRGHG 500
    KRSSYYSDYT FGVWTAGDGG DQLVPVGKAY FGFTDEELLQ IDRFVRRNTT 550
    EKFGPVRHVV HEPDQGLVLE VAFEGLQRSP RHKSGVAMRF PRISRLRWDK 600
    PPRDADRLET LERMLKADGA IPSAAPARGH 630
    Length:630
    Mass (Da):69,343
    Last modified:October 31, 2006 - v1
    Checksum:iC0A0781EE2AB87E7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000283 Genomic DNA. Translation: ABE38031.1.
    RefSeqiWP_011501218.1. NC_007958.1.
    YP_567932.1. NC_007958.1.

    Genome annotation databases

    EnsemblBacteriaiABE38031; ABE38031; RPD_0793.
    GeneIDi4021267.
    KEGGirpd:RPD_0793.
    PATRICi23276470. VBIRhoPal120395_0818.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000283 Genomic DNA. Translation: ABE38031.1 .
    RefSeqi WP_011501218.1. NC_007958.1.
    YP_567932.1. NC_007958.1.

    3D structure databases

    ProteinModelPortali Q13D08.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 316057.RPD_0793.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABE38031 ; ABE38031 ; RPD_0793 .
    GeneIDi 4021267.
    KEGGi rpd:RPD_0793.
    PATRICi 23276470. VBIRhoPal120395_0818.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci RPAL316057:GHDC-813-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: BisB5Imported.

    Entry informationi

    Entry nameiQ13D08_RHOPS
    AccessioniPrimary (citable) accession number: Q13D08
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 31, 2006
    Last sequence update: October 31, 2006
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3