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Protein
Submitted name:

ATP dependent DNA ligase

Gene

RPD_0793

Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-813-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:RPD_0793Imported
OrganismiRhodopseudomonas palustris (strain BisB5)Imported
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001818 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi316057.RPD_0793.

Structurei

3D structure databases

ProteinModelPortaliQ13D08.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiEYPIHLR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q13D08-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAELLDR LAYEPGRNNK LRLITNYFRA TEDPDRGYAL AALTGALSFR
60 70 80 90 100
HAKPGLIREL IAARTDPVLF GLSYDYVGDL SETVALMWPT PRNTAVSTPA
110 120 130 140 150
GGASSPPPGS ASSPPPCGEG SGVGGHSGTP SSWHPHPNPL PQAGEGARSA
160 170 180 190 200
WGEDRDSELS AATSPGHNNP PPPSLTEIVT TLHSLGKAEL PAQLTRWLDE
210 220 230 240 250
LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHD VELMWPGLDA
260 270 280 290 300
PYLDLFAWLE GRGPQPVNRD PAPFRPVMLA HALEDTDFAA MNAADYIAEW
310 320 330 340 350
KWDGIRVQAV SGVGDDGDTI VRLYSRSGED ITRSFPDLLP SLRLPGAIDG
360 370 380 390 400
ELLVLRESRV QSFNVLQQRL NRKSVTPKLI KEYPIHLRAY DLLGEGDDDL
410 420 430 440 450
RTLTFAERRA RLEAFVARLD EPKIDLSPMV TFADWDDLHA ARRDPASAGA
460 470 480 490 500
GLDADAVEGV MLKRRDAPYL PGRPKGQWWK WKHDPHIIDA VLMYAQRGHG
510 520 530 540 550
KRSSYYSDYT FGVWTAGDGG DQLVPVGKAY FGFTDEELLQ IDRFVRRNTT
560 570 580 590 600
EKFGPVRHVV HEPDQGLVLE VAFEGLQRSP RHKSGVAMRF PRISRLRWDK
610 620 630
PPRDADRLET LERMLKADGA IPSAAPARGH
Length:630
Mass (Da):69,343
Last modified:October 31, 2006 - v1
Checksum:iC0A0781EE2AB87E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000283 Genomic DNA. Translation: ABE38031.1.
RefSeqiWP_011501218.1. NC_007958.1.

Genome annotation databases

EnsemblBacteriaiABE38031; ABE38031; RPD_0793.
KEGGirpd:RPD_0793.
PATRICi23276470. VBIRhoPal120395_0818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000283 Genomic DNA. Translation: ABE38031.1.
RefSeqiWP_011501218.1. NC_007958.1.

3D structure databases

ProteinModelPortaliQ13D08.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316057.RPD_0793.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABE38031; ABE38031; RPD_0793.
KEGGirpd:RPD_0793.
PATRICi23276470. VBIRhoPal120395_0818.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiEYPIHLR.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-813-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB5Imported.

Entry informationi

Entry nameiQ13D08_RHOPS
AccessioniPrimary (citable) accession number: Q13D08
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 22, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.