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Q13D08 (Q13D08_RHOPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
ATP dependent DNA ligase EMBL ABE38031.1
Gene names
Ordered Locus Names:RPD_0793
OrganismRhodopseudomonas palustris (strain BisB5) [Complete proteome] [HAMAP] EMBL ABE38031.1
Taxonomic identifier316057 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas ›

Protein attributes

Sequence length630 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABE38031.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q13D08 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: C0A0781EE2AB87E7

FASTA63069,343
        10         20         30         40         50         60 
MNRFAELLDR LAYEPGRNNK LRLITNYFRA TEDPDRGYAL AALTGALSFR HAKPGLIREL 

        70         80         90        100        110        120 
IAARTDPVLF GLSYDYVGDL SETVALMWPT PRNTAVSTPA GGASSPPPGS ASSPPPCGEG 

       130        140        150        160        170        180 
SGVGGHSGTP SSWHPHPNPL PQAGEGARSA WGEDRDSELS AATSPGHNNP PPPSLTEIVT 

       190        200        210        220        230        240 
TLHSLGKAEL PAQLTRWLDE LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHD 

       250        260        270        280        290        300 
VELMWPGLDA PYLDLFAWLE GRGPQPVNRD PAPFRPVMLA HALEDTDFAA MNAADYIAEW 

       310        320        330        340        350        360 
KWDGIRVQAV SGVGDDGDTI VRLYSRSGED ITRSFPDLLP SLRLPGAIDG ELLVLRESRV 

       370        380        390        400        410        420 
QSFNVLQQRL NRKSVTPKLI KEYPIHLRAY DLLGEGDDDL RTLTFAERRA RLEAFVARLD 

       430        440        450        460        470        480 
EPKIDLSPMV TFADWDDLHA ARRDPASAGA GLDADAVEGV MLKRRDAPYL PGRPKGQWWK 

       490        500        510        520        530        540 
WKHDPHIIDA VLMYAQRGHG KRSSYYSDYT FGVWTAGDGG DQLVPVGKAY FGFTDEELLQ 

       550        560        570        580        590        600 
IDRFVRRNTT EKFGPVRHVV HEPDQGLVLE VAFEGLQRSP RHKSGVAMRF PRISRLRWDK 

       610        620        630 
PPRDADRLET LERMLKADGA IPSAAPARGH

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000283 Genomic DNA. Translation: ABE38031.1.
RefSeqYP_567932.1. NC_007958.1.

3D structure databases

ProteinModelPortalQ13D08.
ModBaseSearch...

Protein-protein interaction databases

STRING316057.RPD_0793.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE38031; ABE38031; RPD_0793.
GeneID4021267.
KEGGrpd:RPD_0793.
PATRIC23276470. VBIRhoPal120395_0818.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAAYDLLEW.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycRPAL316057:GHDC-867-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ13D08_RHOPS
AccessionPrimary (citable) accession number: Q13D08
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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