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Q13B59 (TYPH_RHOPS) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:RPD_1443
OrganismRhodopseudomonas palustris (strain BisB5) [Complete proteome] [HAMAP]
Taxonomic identifier316057 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas

Protein attributes

Sequence length514 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 514514Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314716

Sequences

Sequence LengthMass (Da)Tools
Q13B59 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: 1253EE274B903BB7

FASTA51454,666
        10         20         30         40         50         60 
MNASHLSRPP LTIRRISLDT GRENVAVISR RSRALRADVF RGFSRVALRI NTKVLLATLM 

        70         80         90        100        110        120 
ITDDDAMIGP DELGLSEPAF RRFNEPVGSA VSVSPAQPPA SLDAVRAKIQ GHTLTPAEIT 

       130        140        150        160        170        180 
AVIDDVAHFR YSDMEIAAFL ISAARFTSTD ELLALVDAMA SVGTRLKWQN PIVVDKHCIG 

       190        200        210        220        230        240 
GIPGNRTTMI VVPIVAAQGL MIPKTSSRAI TSPAGTADTM EVLARVDLDV EQMKRVVTTC 

       250        260        270        280        290        300 
GGCLIWGGHV NLSPADDILI SVERPLSLDT PEQMVASIMS KKLAAGSTRL LIDFPVGPSA 

       310        320        330        340        350        360 
KIASASEAMR LRKLFEFVGD HFGIAVEVVT TDGRQPIGRG IGPVLEARDV MAVLGNEPNA 

       370        380        390        400        410        420 
PADLREKSLR LAAHLLEYDP LLRGGAGYAR AKELLDSGAA LKKMQQIIDA QGPSVCNSEL 

       430        440        450        460        470        480 
GSHAADVLAP ADGVVNGIDC LRINRLARTA GAPIVKGAGI DLFKKIGDRV DQGEPIYRIY 

       490        500        510 
ASDRSELDLA IAAAEAESGF SVNHHSPAAV EPVS 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000283 Genomic DNA. Translation: ABE38680.1.
RefSeqYP_568581.1. NC_007958.1.

3D structure databases

ProteinModelPortalQ13B59.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316057.RPD_1443.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE38680; ABE38680; RPD_1443.
GeneID4021920.
KEGGrpd:RPD_1443.
PATRIC23277829. VBIRhoPal120395_1495.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMACLIWGGH.
OrthoDBEOG61ZTGG.

Enzyme and pathway databases

BioCycRPAL316057:GHDC-1466-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_RHOPS
AccessionPrimary (citable) accession number: Q13B59
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 31, 2006
Last modified: May 14, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families