Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q136D5 (Q136D5_RHOPS) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Triosephosphate isomerase HAMAP MF_00147
Short name=TIM HAMAP MF_00147
EC=5.3.1.1 HAMAP MF_00147
Alternative name(s):
Triose-phosphate isomerase HAMAP MF_00147
Gene names
Name:tpiA HAMAP MF_00147
Ordered Locus Names:RPD_2826
OrganismRhodopseudomonas palustris (strain BisB5) [Complete proteome] [HAMAP]
Taxonomic identifier316057 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas

Protein attributes

Sequence length257 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-glyceraldehyde 3-phosphate = glycerone phosphate. HAMAP MF_00147 RuleBase RU000517

Pathway

Carbohydrate biosynthesis; gluconeogenesis. HAMAP MF_00147 RuleBase RU003527

Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1. HAMAP MF_00147 RuleBase RU003527

Subunit structure

Homodimer By similarity. HAMAP MF_00147

Subcellular location

Cytoplasm By similarity HAMAP MF_00147.

Sequence similarities

Belongs to the triosephosphate isomerase family. RuleBase RU004162 HAMAP MF_00147

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1041Electrophile By similarity HAMAP MF_00147
Active site1741Proton acceptor By similarity HAMAP MF_00147
Binding site131Substrate By similarity HAMAP MF_00147
Binding site151Substrate By similarity HAMAP MF_00147

Sequences

Sequence LengthMass (Da)Tools
Q136D5 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: E418078988E72FB2

FASTA25726,230
        10         20         30         40         50         60 
MPVPAVRSLI AGNWKMNGLK AASSEFDAML EGATELSSGI DLLVCPPATL IAAFADRLAA 

        70         80         90        100        110        120 
NEKGALAVAI GAQDCHANAT GAHTGDISAE MLADAGARAI IVGHSERRAD HGETDAIVRT 

       130        140        150        160        170        180 
KAQAAWRAGL VAIVCVGETQ GERNAGHTLD VVAGQLAGSL PDGATAANLV VAYEPVWAIG 

       190        200        210        220        230        240 
TGMTPTAADV EEVHGFIRQT LTQRFNAEGD QMRLLYGGSV KPSNARELMS VPHVNGALVG 

       250 
GASLKASDFL AIAAGCP

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB5."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000283 Genomic DNA. Translation: ABE40054.1.
RefSeqYP_569955.1. NC_007958.1.

3D structure databases

ProteinModelPortalQ136D5.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ136D5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4023324.
GenomeReviewsGene locus RPD_2826 in contig CP000283_GR.
KEGGrpd:RPD_2826.
PATRIC23280699. VBIRhoPal120395_2915.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0149.
HOGENOMHBG708281.
OMAVCVGETQ.
ProtClustDBPRK00042.

Enzyme and pathway databases

BioCycRPAL316057:RPD_2826-MONOMER.

Family and domain databases

HAMAPMF_00147_B. TIM_B.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR022896. TrioseP_Isoase_bac/euk.
IPR000652. Triosephosphate_isomerase.
IPR020861. Triosephosphate_isomerase_AS.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01803.
PANTHERPTHR21139. Triophos_ismrse. 1 hit.
PfamPF00121. TIM. 1 hit.
[Graphical view]
SUPFAMSSF51351. Triophos_ismrse. 1 hit.
TIGRFAMsTIGR00419. Tim. 1 hit.
PROSITEPS00171. TIM_1. 1 hit.
PS51440. TIM_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ136D5_RHOPS
AccessionPrimary (citable) accession number: Q136D5
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: December 14, 2011
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info