SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q136A2

- Y2859_RHOPS

UniProt

Q136A2 - Y2859_RHOPS

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Probable RNA methyltransferase RPD_2859

Gene
RPD_2859
Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Binds 1 4Fe-4S cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei99 – 991Proton acceptor Reviewed prediction
Metal bindingi119 – 1191Iron-sulfur (4Fe-4S-S-AdoMet) By similarity
Metal bindingi123 – 1231Iron-sulfur (4Fe-4S-S-AdoMet) By similarity
Metal bindingi126 – 1261Iron-sulfur (4Fe-4S-S-AdoMet) By similarity
Binding sitei194 – 1941S-adenosyl-L-methionine By similarity
Binding sitei293 – 2931S-adenosyl-L-methionine; via amide nitrogen and carbonyl oxygen By similarity
Active sitei336 – 3361S-methylcysteine intermediate By similarity

GO - Molecular functioni

  1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
  3. RNA methyltransferase activity Source: InterPro

GO - Biological processi

  1. rRNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Methyltransferase, Transferase

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-2903-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable RNA methyltransferase RPD_2859 (EC:2.1.1.-)
Gene namesi
Ordered Locus Names:RPD_2859
OrganismiRhodopseudomonas palustris (strain BisB5)
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001818: Chromosome

Subcellular locationi

Cytoplasm Reviewed prediction

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 359359Probable RNA methyltransferase RPD_2859PRO_0000350372Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi112 ↔ 336(transient) By similarity

Keywords - PTMi

Disulfide bond

Interactioni

Protein-protein interaction databases

STRINGi316057.RPD_2859.

Structurei

3D structure databases

ProteinModelPortaliQ136A2.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni162 – 1632S-adenosyl-L-methionine binding By similarity
Regioni217 – 2193S-adenosyl-L-methionine binding By similarity

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0820.
HOGENOMiHOG000217991.
KOiK06941.
OMAiCAFACRF.
OrthoDBiEOG6DJZ2N.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR006638. Elp3/MiaB/NifB.
IPR004383. rRNA_lsu_MTrfase_RlmN/Cfr.
IPR007197. rSAM.
[Graphical view]
PANTHERiPTHR30544. PTHR30544. 1 hit.
PfamiPF04055. Radical_SAM. 1 hit.
[Graphical view]
PIRSFiPIRSF006004. CHP00048. 1 hit.
SMARTiSM00729. Elp3. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00048. TIGR00048. 1 hit.

Sequencei

Sequence statusi: Complete.

Q136A2-1 [UniParc]FASTAAdd to Basket

« Hide

MASAQRHSTP DLVRQRDPAG VSGLSLGLTS SEFAGLHEGA VPDVTYRELF    50
FPHADPPRRL QNWARSRGVR LRTLTRIGRD QGGRSEKMLF GLHDGYAVES 100
VLIRRFDGHT ACISSQVGCA FACRFCASGQ AGLMRNLEAG EIVEQVVRLG 150
PKVNRIVFMG IGEPLNNYQQ VLKAIRILRD RQGMNFPTTG ITLSTIGIPK 200
ALKQLREEHL AINLTISLHA TTQEVRDRLI PGARKHPLGE VVERACAWAR 250
RHNRPVTFAY LVLPGINDSI ADARRLAAML RDSPARVNLM RWNPVDGVGL 300
QRTPDRSLAH FRTTLENALV PVVVRDTQGR DISAACGQLW LRDLKGLPVG 350
NRPRQGRMT 359
Length:359
Mass (Da):39,815
Last modified:October 31, 2006 - v1
Checksum:iCBEDC1DC5F019B71
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE40087.1.
RefSeqiWP_011503264.1. NC_007958.1.
YP_569988.1. NC_007958.1.

Genome annotation databases

EnsemblBacteriaiABE40087; ABE40087; RPD_2859.
GeneIDi4023357.
KEGGirpd:RPD_2859.
PATRICi23280771. VBIRhoPal120395_2951.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE40087.1 .
RefSeqi WP_011503264.1. NC_007958.1.
YP_569988.1. NC_007958.1.

3D structure databases

ProteinModelPortali Q136A2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316057.RPD_2859.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE40087 ; ABE40087 ; RPD_2859 .
GeneIDi 4023357.
KEGGi rpd:RPD_2859.
PATRICi 23280771. VBIRhoPal120395_2951.

Phylogenomic databases

eggNOGi COG0820.
HOGENOMi HOG000217991.
KOi K06941.
OMAi CAFACRF.
OrthoDBi EOG6DJZ2N.

Enzyme and pathway databases

BioCyci RPAL316057:GHDC-2903-MONOMER.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
InterProi IPR013785. Aldolase_TIM.
IPR006638. Elp3/MiaB/NifB.
IPR004383. rRNA_lsu_MTrfase_RlmN/Cfr.
IPR007197. rSAM.
[Graphical view ]
PANTHERi PTHR30544. PTHR30544. 1 hit.
Pfami PF04055. Radical_SAM. 1 hit.
[Graphical view ]
PIRSFi PIRSF006004. CHP00048. 1 hit.
SMARTi SM00729. Elp3. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00048. TIGR00048. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB5.

Entry informationi

Entry nameiY2859_RHOPS
AccessioniPrimary (citable) accession number: Q136A2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi