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Reviewed, UniProtKB/Swiss-Prot Q13627 (DYR1A_HUMAN)

Last modified January 19, 2010. Version 108. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (7) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Dual specificity tyrosine-phosphorylation-regulated kinase 1A
    EC=2.7.12.1
Alternative name(s):
    Protein kinase minibrain homolog
      Short name=MNBH
      Short name=hMNB
    HP86
    Dual specificity YAK1-related kinase
Gene names
Name: DYRK1A
Synonyms: DYRK, MNB, MNBH
OrganismHomo sapiens (Human) [Complete proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length763 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

May play a role in a signaling pathway regulating nuclear functions of cell proliferation. Phosphorylates serine, threonine and tyrosine residues in its sequence and in exogenous substrates. Ref.3

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Enzyme regulation

Inhibited by RANBP9. Ref.7

Subunit structure

Interacts RAD54L2/ARIP4 By similarity. Interacts with RANBP9. Interacts with WDR68. Ref.7 Ref.8

Subcellular location

Nucleus speckle.

Tissue specificity

Ubiquitous. Highest levels in skeletal muscle, testis, fetal lung and fetal kidney. Ref.3 Ref.1 Ref.2 Ref.5

Developmental stage

Expressed in the developing central nervous system. Overexpressed 1.5-fold in fetal Down syndrome brain. Ref.3

Post-translational modification

Autophosphorylated on tyrosine residues. Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.16

Sequence similarities

Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. MNB/DYRK subfamily.

Contains 1 protein kinase domain.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

YWHABP319463EBI-1053621,EBI-359815

Alternative products

This entry describes 5 isoforms produced by alternative splicing. [Align] [Select]

Note: Additional isoforms seem to exist.
Isoform Long (identifier: Q13627-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 1 (identifier: Q13627-2)

The sequence of this isoform differs from the canonical sequence as follows:
     70-78: Missing.
Isoform 2 (identifier: Q13627-3)

The sequence of this isoform differs from the canonical sequence as follows:
     516-529: GGSSGTSNSGRARS → GASAISCSSWLVRH
     530-763: Missing.
Isoform 3 (identifier: Q13627-4)

The sequence of this isoform differs from the canonical sequence as follows:
     516-540: GGSSGTSNSGRARSDPTHQHRHSGG → VEQHWMPGAFRMTVSFTLEVHDVPV
     541-763: Missing.
Isoform 4 (identifier: Q13627-5)

The sequence of this isoform differs from the canonical sequence as follows:
     559-584: RQQFPAPLGWSGTEAPTQVTVETHPV → SSHVVHLLVSPAILRWSSTGCQVPLE
     585-763: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 763763Dual specificity tyrosine-phosphorylation-regulated kinase 1A
PRO_0000085931

Regions

Domain159 – 479321Protein kinase
Nucleotide binding165 – 1739ATP By similarity
Motif117 – 13418Bipartite nuclear localization signal Potential
Compositional bias509 – 5157Poly-Ser
Compositional bias599 – 6024Poly-His
Compositional bias607 – 61913Poly-His
Compositional bias656 – 67217Ser/Thr-rich
Compositional bias664 – 6718Poly-Ser

Sites

Active site2871Proton acceptor By similarity
Binding site1881ATP By similarity

Amino acid modifications

Modified residue1451Phosphotyrosine Ref.9 Ref.10 Ref.16
Modified residue2191Phosphotyrosine; by autocatalysis By similarity
Modified residue3191Phosphotyrosine; by autocatalysis By similarity
Modified residue3211Phosphotyrosine; by autocatalysis Ref.9 Ref.11 Ref.12 Ref.13 Ref.14 Ref.15 Ref.16
Modified residue3241Phosphoserine Ref.16
Modified residue7481Phosphoserine Ref.13
Modified residue7581Phosphoserine Ref.13

Natural variations

Alternative sequence70 – 789Missing in isoform 1.
VSP_004917
Alternative sequence516 – 54025GGSSG…RHSGG → VEQHWMPGAFRMTVSFTLEV HDVPV in isoform 3.
VSP_004920
Alternative sequence516 – 52914GGSSG…GRARS → GASAISCSSWLVRH in isoform 2.
VSP_004918
Alternative sequence530 – 763234Missing in isoform 2.
VSP_004919
Alternative sequence541 – 763223Missing in isoform 3.
VSP_004921
Alternative sequence559 – 58426RQQFP…ETHPV → SSHVVHLLVSPAILRWSSTG CQVPLE in isoform 4.
VSP_004922
Alternative sequence585 – 763179Missing in isoform 4.
VSP_004923
Natural variant4151Y → F
VAR_009395
Natural variant6791A → P: dbSNP rs55720916. Ref.1 Ref.17
VAR_040453
Natural variant6811Q → H
VAR_009396

Experimental info

Sequence conflict321G → A in AAC50939. Ref.1
Sequence conflict471N → S in AAC50939. Ref.1
Sequence conflict571S → P in AAC50939. Ref.1
Sequence conflict1231Q → R in AAC50939. Ref.1
Sequence conflict2661A → V in CAA05059. Ref.6
Sequence conflict3571G → R in CAA05059. Ref.6
Sequence conflict3971K → N in AAC50939. Ref.1
Sequence conflict5921A → G in AAC50939. Ref.1

Secondary structure

....................................................... 763
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform Long [UniParc].

Last modified July 15, 1998. Version 2.
Checksum: 7C3A52A3CBB04FB5

FASTA76385,584
        10         20         30         40         50         60 
MHTGGETSAC KPSSVRLAPS FSFHAAGLQM AGQMPHSHQY SDRRQPNISD QQVSALSYSD 

        70         80         90        100        110        120 
QIQQPLTNQV MPDIVMLQRR MPQTFRDPAT APLRKLSVDL IKTYKHINEV YYAKKKRRHQ 

       130        140        150        160        170        180 
QGQGDDSSHK KERKVYNDGY DDDNYDYIVK NGEKWMDRYE IDSLIGKGSF GQVVKAYDRV 

       190        200        210        220        230        240 
EQEWVAIKII KNKKAFLNQA QIEVRLLELM NKHDTEMKYY IVHLKRHFMF RNHLCLVFEM 

       250        260        270        280        290        300 
LSYNLYDLLR NTNFRGVSLN LTRKFAQQMC TALLFLATPE LSIIHCDLKP ENILLCNPKR 

       310        320        330        340        350        360 
SAIKIVDFGS SCQLGQRIYQ YIQSRFYRSP EVLLGMPYDL AIDMWSLGCI LVEMHTGEPL 

       370        380        390        400        410        420 
FSGANEVDQM NKIVEVLGIP PAHILDQAPK ARKFFEKLPD GTWNLKKTKD GKREYKPPGT 

       430        440        450        460        470        480 
RKLHNILGVE TGGPGGRRAG ESGHTVADYL KFKDLILRML DYDPKTRIQP YYALQHSFFK 

       490        500        510        520        530        540 
KTADEGTNTS NSVSTSPAME QSQSSGTTSS TSSSSGGSSG TSNSGRARSD PTHQHRHSGG 

       550        560        570        580        590        600 
HFTAAVQAMD CETHSPQVRQ QFPAPLGWSG TEAPTQVTVE THPVQETTFH VAPQQNALHH 

       610        620        630        640        650        660 
HHGNSSHHHH HHHHHHHHHG QQALGNRTRP RVYNSPTNSS STQDSMEVGH SHHSMTSLSS 

       670        680        690        700        710        720 
STTSSSTSSS STGNQGNQAY QNRPVAANTL DFGQNGAMDV NLTVYSNPRQ ETGIAGHPTY 

       730        740        750        760 
QFSANTGPAH YMTEGHLTMR QGADREESPM TGVCVQQSPV ASS 

« Hide

Isoform 1.

Checksum: 59518E25F1D4FF96
Show »

FASTA75484,556
Isoform 2.

Checksum: F639B3152ACC7750
Show »

FASTA52960,330
Isoform 3.

Checksum: E02CE08DF1AE0AED
Show »

FASTA54061,770
Isoform 4.

Checksum: BA2480B34BAB2878
Show »

FASTA58466,099

References

« Hide 'large scale' references
[1]"Isolation of human and murine homologues of the Drosophila minibrain gene: human homologue maps to 21q22.2 in the Down syndrome 'critical region'."
Song W.J., Sternberg L.R., Kasten-Sportes C., van Keuren M.L., Chung S.H., Slack A.C., Miller D.E., Glover T.W., Chiang P.W., Lou L., Kurnit D.W.
Genomics 38:331-339(1996) [PubMed: 8975710] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM LONG), VARIANT PRO-679, TISSUE SPECIFICITY.
Tissue: Fetal brain.
[2]"A human homologue of Drosophila minibrain (MNB) is expressed in the neuronal regions affected in Down syndrome and maps to the critical region."
Guimera J., Casas C., Pucharcos C., Solans A., Domenech A., Planas A.M., Ashley J., Lovett M., Estivill X., Pritchard M.A.
Hum. Mol. Genet. 5:1305-1310(1996) [PubMed: 8872470] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM LONG), TISSUE SPECIFICITY, POSSIBLE INVOLVEMENT IN DOWN SYNDROME.
[3]"Cloning of a human homolog of the Drosophila minibrain/rat Dyrk gene from 'the Down syndrome critical region' of chromosome 21."
Shindoh N., Kudoh J., Maeda H., Yamaki A., Minoshima S., Shimizu Y., Shimizu N.
Biochem. Biophys. Res. Commun. 225:92-99(1996) [PubMed: 8769099] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
Tissue: Fetal brain.
[4]"Gene identification in 1.6-Mb region of the Down syndrome region on chromosome 21."
Ohira M., Seki N., Nagase T., Suzuki E., Nomura N., Ohara O., Hattori M., Sakaki Y., Eki T., Murakami Y., Saito T., Ichikawa H., Ohki M.
Genome Res. 7:47-58(1997) [PubMed: 9037601] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Tissue: Promyelocytic leukemia.
[5]"Human minibrain homologue (MNBH/DYRK1): characterization, alternative splicing, differential tissue expression, and overexpression in Down syndrome."
Guimera J., Casas C., Estivill X., Pritchard M.A.
Genomics 57:407-418(1999) [PubMed: 10329007] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4), TISSUE SPECIFICITY, POSSIBLE INVOLVEMENT IN DOWN SYNDROME, VARIANTS PHE-415 AND HIS-681, ALTERNATIVE SPLICING.
[6]"Transcriptional map of the 2.5-Mb CBR-ERG region of chromosome 21 involved in Down syndrome."
Dahmane N., Ait-Ghezala G., Gosset P., Chamoun Z., Dufresne-Zacharia M.-C., Lopes C., Rabatel N., Gassanova-Maugenre S., Chettouh Z., Abramowski V., Fayet E., Yaspo M.-L., Korn B., Blouin J.-L., Lehrach H., Poustka A., Antonarakis S.E., Sinet P.-M., Creau N., Delabar J.-M.
Genomics 48:12-23(1998) [PubMed: 9503011] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 234-380.
Tissue: Fetal brain.
[7]"Serine/threonine kinase Mirk/Dyrk1B is an inhibitor of epithelial cell migration and is negatively regulated by the Met adaptor Ran-binding protein M."
Zou Y., Lim S., Lee K., Deng X., Friedman E.
J. Biol. Chem. 278:49573-49581(2003) [PubMed: 14500717] [Abstract]
Cited for: INTERACTION WITH RANBP9, ENZYME REGULATION.
[8]"Phosphorylation of Ser640 in muscle glycogen synthase by DYRK family protein kinases."
Skurat A.V., Dietrich A.D.
J. Biol. Chem. 279:2490-2498(2004) [PubMed: 14593110] [Abstract]
Cited for: INTERACTION WITH WDR68.
[9]"Immunoaffinity profiling of tyrosine phosphorylation in cancer cells."
Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J.
Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-145 AND TYR-321, MASS SPECTROMETRY.
[10]"Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer."
Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. expand/collapse author list , Yuan J., Bakalarski C.E., Villen J., Kornhauser J.M., Smith B., Li D., Zhou X., Gygi S.P., Gu T.-L., Polakiewicz R.D., Rush J., Comb M.J.
Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-145, MASS SPECTROMETRY.
[11]"Proteomics analysis of protein kinases by target class-selective prefractionation and tandem mass spectrometry."
Wissing J., Jaensch L., Nimtz M., Dieterich G., Hornberger R., Keri G., Wehland J., Daub H.
Mol. Cell. Proteomics 6:537-547(2007) [PubMed: 17192257] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-321, MASS SPECTROMETRY.
[12]"Phosphoproteome of resting human platelets."
Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A.
J. Proteome Res. 7:526-534(2008) [PubMed: 18088087] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-321, MASS SPECTROMETRY.
Tissue: Platelet.
[13]"Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle."
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M.
Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-321; SER-748 AND SER-758, MASS SPECTROMETRY.
[14]"Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach."
Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.
Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-321, MASS SPECTROMETRY.
[15]"An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells."
Heibeck T.H., Ding S.-J., Opresko L.K., Zhao R., Schepmoes A.A., Yang F., Tolmachev A.V., Monroe M.E., Camp D.G. II, Smith R.D., Wiley H.S., Qian W.-J.
J. Proteome Res. 8:3852-3861(2009) [PubMed: 19534553] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-321, MASS SPECTROMETRY.
Tissue: Mammary epithelium.
[16]"Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-145; TYR-321 AND SER-324, MASS SPECTROMETRY.
Tissue: T-cell.
[17]"Patterns of somatic mutation in human cancer genomes."
Greenman C., Stephens P., Smith R., Dalgliesh G.L., Hunter C., Bignell G., Davies H., Teague J., Butler A., Stevens C., Edkins S., O'Meara S., Vastrik I., Schmidt E.E., Avis T., Barthorpe S., Bhamra G., Buck G. expand/collapse author list , Choudhury B., Clements J., Cole J., Dicks E., Forbes S., Gray K., Halliday K., Harrison R., Hills K., Hinton J., Jenkinson A., Jones D., Menzies A., Mironenko T., Perry J., Raine K., Richardson D., Shepherd R., Small A., Tofts C., Varian J., Webb T., West S., Widaa S., Yates A., Cahill D.P., Louis D.N., Goldstraw P., Nicholson A.G., Brasseur F., Looijenga L., Weber B.L., Chiew Y.-E., DeFazio A., Greaves M.F., Green A.R., Campbell P., Birney E., Easton D.F., Chenevix-Trench G., Tan M.-H., Khoo S.K., Teh B.T., Yuen S.T., Leung S.Y., Wooster R., Futreal P.A., Stratton M.R.
Nature 446:153-158(2007) [PubMed: 17344846] [Abstract]
Cited for: VARIANT [LARGE SCALE ANALYSIS] PRO-679.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U58496 mRNA. Translation: AAC50939.1.
U52373 mRNA. Translation: AAB18639.1.
D85759 mRNA. Translation: BAA12866.1.
D86550 mRNA. Translation: BAA13110.1.
AF108830 mRNA. Translation: AAD31169.1.
AJ001870 mRNA. Translation: CAA05059.1.
IPIIPI00014344.
IPI00219250.
IPI00219251.
IPI00219252.
IPI00941492.
PIRJC4898.
RefSeqNP_001387.2.
NP_567824.1.
NP_569120.1.
NP_569121.1.
NP_569122.1.
UniGeneHs.368240

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2VX3X-ray2.40A/B/C/D127-485[»]
2WO6X-ray2.50A/B127-485[»]
ModBaseSearch...

Protein-protein interaction databases

IntActQ13627. 6 interactions.
STRINGQ13627.

PTM databases

PhosphoSiteQ13627.

Proteomic databases

PRIDEQ13627.

Genome annotation databases

EnsemblENST00000398960; ENSP00000381932; ENSG00000157540; Homo sapiens. [Genome view]
GeneID1859.
KEGGhsa:1859.
UCSCuc002ywi.1. human.
uc002ywj.1. human.
uc002ywk.1. human.
uc002ywl.1. human.

Organism-specific databases

CTD1859.
GeneCardsGC21P037661.
H-InvDBHIX0040839.
HGNCHGNC:3091. DYRK1A.
HPAHPA015323.
HPA015810.
MIM600855. gene.
PharmGKBPA27545.
GenAtlasSearch...

Phylogenomic databases

eggNOGprNOG04928.
HOGENOMHBG755340.
HOVERGENQ13627.
InParanoidQ13627.
OMAHRHSGGH.

Enzyme and pathway databases

BRENDA2.7.12.1. 247.

Gene expression databases

ArrayExpressQ13627.
BgeeQ13627.
CleanExHS_DYRK1A.
GenevestigatorQ13627.
GermOnlineENSG00000157540. Homo sapiens.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_cat_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR017442. Se/Thr_prot_kinase-like_dom.
IPR008271. Ser/Thr_prot_kinase_AS.
IPR002290. Ser/Thr_prot_kinase_dom.
[Graphical view]
PfamPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTSM00220. S_TKc. 1 hit.
[Graphical view]
PROSITEPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio7615.
SOURCESearch...

Entry information

Entry nameDYR1A_HUMAN
AccessionPrimary (citable) accession number: Q13627
Secondary accession number(s): O60769 expand/collapse secondary AC list , Q92582, Q92810, Q9UNM5
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 15, 1998
Last modified: January 19, 2010
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

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Index of human polymorphisms and disease mutations

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Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

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SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents