Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q135M1 (Q135M1_RHOPS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length409 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS020622

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS020622

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site641Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2831Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1621Substrate By similarity HAMAP-Rule MF_01201
Binding site3361Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue641N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
Q135M1 [UniParc].

Last modified October 31, 2006. Version 1.
Checksum: E4B30512358D9895

FASTA40942,362
        10         20         30         40         50         60 
MNILPDPNAT VASLLTPEAA KAAALAAATA TAPGVLTVDL DAIVANWRKI EKTAVPAEAA 

        70         80         90        100        110        120 
AVVKGDAYGC GIGPVSKALA AAGCKTFFVA TLGEAGAVRA IAPDAVIYVL DGFFQTTGDE 

       130        140        150        160        170        180 
FARLNCRPVI GDLYELAEWD VYCRRTRWSG GAAIHIDTGM NRLGLTVAEA QGIVPRIAAG 

       190        200        210        220        230        240 
DHGITLVISH LAAAEALNHP MNARQVTAFR EIASLFTGVA ASLSASSGVF LGPQFAFDMV 

       250        260        270        280        290        300 
RPGAALYGIN PTPEADNPMK PVVDLKARIV QVRSVERGDS VGYGGTWTAR RPTRIAVLSA 

       310        320        330        340        350        360 
GYADGYFRAA GSNDGTRGAD VVIAGQRCPI AGRVSMDLLA VDVTDLPANA ARRGLMATLI 

       370        380        390        400 
GDGITVDELG HHFGTIGYEV LTSLGARYAR IYSGGDAKPE ETPAEQSGA 

« Hide

References

[1]"Complete sequence of Rhodopseudomonas palustris BisB5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P.
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BisB5 EMBL ABE40218.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000283 Genomic DNA. Translation: ABE40218.1.
RefSeqYP_570119.1. NC_007958.1.

3D structure databases

ProteinModelPortalQ135M1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING316057.RPD_2992.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABE40218; ABE40218; RPD_2992.
GeneID4023495.
KEGGrpd:RPD_2992.
PATRIC23281049. VBIRhoPal120395_3087.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0787.
HOGENOMHOG000031445.
KOK01775.
OMAANSAGIC.
OrthoDBEOG6PP9NJ.

Enzyme and pathway databases

BioCycRPAL316057:GHDC-3041-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ135M1_RHOPS
AccessionPrimary (citable) accession number: Q135M1
Entry history
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: July 9, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)