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Q135M1

- Q135M1_RHOPS

UniProt

Q135M1 - Q135M1_RHOPS

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Protein
Alanine racemase
Gene
RPD_2992
Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotations

Cofactori

Pyridoxal phosphate By similarity.UniRule annotationSAAS annotations

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei64 – 641Proton acceptor; specific for D-alanine By similarityUniRule annotation
Binding sitei162 – 1621Substrate By similarityUniRule annotation
Active sitei283 – 2831Proton acceptor; specific for L-alanine By similarityUniRule annotation
Binding sitei336 – 3361Substrate; via amide nitrogen By similarityUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotationsImported

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotations

Enzyme and pathway databases

BioCyciRPAL316057:GHDC-3041-MONOMER.
UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:RPD_2992Imported
OrganismiRhodopseudomonas palustris (strain BisB5)Imported
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
ProteomesiUP000001818: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei64 – 641N6-(pyridoxal phosphate)lysine By similarityUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi316057.RPD_2992.

Structurei

3D structure databases

ProteinModelPortaliQ135M1.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0787.
HOGENOMiHOG000031445.
KOiK01775.
OMAiANSAGIC.
OrthoDBiEOG6PP9NJ.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q135M1-1 [UniParc]FASTAAdd to Basket

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MNILPDPNAT VASLLTPEAA KAAALAAATA TAPGVLTVDL DAIVANWRKI    50
EKTAVPAEAA AVVKGDAYGC GIGPVSKALA AAGCKTFFVA TLGEAGAVRA 100
IAPDAVIYVL DGFFQTTGDE FARLNCRPVI GDLYELAEWD VYCRRTRWSG 150
GAAIHIDTGM NRLGLTVAEA QGIVPRIAAG DHGITLVISH LAAAEALNHP 200
MNARQVTAFR EIASLFTGVA ASLSASSGVF LGPQFAFDMV RPGAALYGIN 250
PTPEADNPMK PVVDLKARIV QVRSVERGDS VGYGGTWTAR RPTRIAVLSA 300
GYADGYFRAA GSNDGTRGAD VVIAGQRCPI AGRVSMDLLA VDVTDLPANA 350
ARRGLMATLI GDGITVDELG HHFGTIGYEV LTSLGARYAR IYSGGDAKPE 400
ETPAEQSGA 409
Length:409
Mass (Da):42,362
Last modified:October 31, 2006 - v1
Checksum:iE4B30512358D9895
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE40218.1.
RefSeqiWP_011503392.1. NC_007958.1.
YP_570119.1. NC_007958.1.

Genome annotation databases

EnsemblBacteriaiABE40218; ABE40218; RPD_2992.
GeneIDi4023495.
KEGGirpd:RPD_2992.
PATRICi23281049. VBIRhoPal120395_3087.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000283 Genomic DNA. Translation: ABE40218.1 .
RefSeqi WP_011503392.1. NC_007958.1.
YP_570119.1. NC_007958.1.

3D structure databases

ProteinModelPortali Q135M1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 316057.RPD_2992.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABE40218 ; ABE40218 ; RPD_2992 .
GeneIDi 4023495.
KEGGi rpd:RPD_2992.
PATRICi 23281049. VBIRhoPal120395_3087.

Phylogenomic databases

eggNOGi COG0787.
HOGENOMi HOG000031445.
KOi K01775.
OMAi ANSAGIC.
OrthoDBi EOG6PP9NJ.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .
BioCyci RPAL316057:GHDC-3041-MONOMER.

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BisB5Imported.

Entry informationi

Entry nameiQ135M1_RHOPS
AccessioniPrimary (citable) accession number: Q135M1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: September 3, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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