Q135M1 (Q135M1_RHOPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

RPD_2992

Organism

Rhodopseudomonas palustris (strain BisB5) [Complete proteome] [HAMAP] EMBL ABE40218.1

Taxonomic identifier

316057 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Rhodopseudomonas › Rhodopseudomonas palustris

Protein attributes

Sequence length	409 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL ABE40218.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q135M1 [UniParc]. Last modified October 31, 2006. Version 1. Checksum: E4B30512358D9895	FASTA	409	42,362
	10 20 30 40 50 60 MNILPDPNAT VASLLTPEAA KAAALAAATA TAPGVLTVDL DAIVANWRKI EKTAVPAEAA 70 80 90 100 110 120 AVVKGDAYGC GIGPVSKALA AAGCKTFFVA TLGEAGAVRA IAPDAVIYVL DGFFQTTGDE 130 140 150 160 170 180 FARLNCRPVI GDLYELAEWD VYCRRTRWSG GAAIHIDTGM NRLGLTVAEA QGIVPRIAAG 190 200 210 220 230 240 DHGITLVISH LAAAEALNHP MNARQVTAFR EIASLFTGVA ASLSASSGVF LGPQFAFDMV 250 260 270 280 290 300 RPGAALYGIN PTPEADNPMK PVVDLKARIV QVRSVERGDS VGYGGTWTAR RPTRIAVLSA 310 320 330 340 350 360 GYADGYFRAA GSNDGTRGAD VVIAGQRCPI AGRVSMDLLA VDVTDLPANA ARRGLMATLI 370 380 390 400 GDGITVDELG HHFGTIGYEV LTSLGARYAR IYSGGDAKPE ETPAEQSGA

References

[1]

"Complete sequence of Rhodopseudomonas palustris BisB5." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. , Hauser L., Pelletier D.A., Kyrpides N., Lykidis A., Oda Y., Harwood C.S., Richardson P. Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: BisB5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000283 Genomic DNA. Translation: ABE40218.1.
RefSeq	YP_570119.1. NC_007958.1.
3D structure databases
ProteinModelPortal	Q135M1.
ModBase	Search...
Protein-protein interaction databases
STRING	316057.RPD_2992.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABE40218; ABE40218; RPD_2992.
GeneID	4023495.
KEGG	rpd:RPD_2992.
PATRIC	23281049. VBIRhoPal120395_3087.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0787.
HOGENOM	HOG000031445.
KO	K01775.
OMA	DELGHHF.
ProtClustDB	CLSK819335.
Enzyme and pathway databases
BioCyc	RPAL316057:GHDC-3065-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q135M1_RHOPS

Accession

Primary (citable) accession number: Q135M1

Entry history

Integrated into UniProtKB/TrEMBL:	October 31, 2006
Last sequence update:	October 31, 2006
Last modified:	May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)