ID SEM5A_HUMAN Reviewed; 1074 AA. AC Q13591; D3DTC6; O60408; Q1RLL9; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 30-MAY-2006, sequence version 3. DT 24-JAN-2024, entry version 207. DE RecName: Full=Semaphorin-5A; DE AltName: Full=Semaphorin-F; DE Short=Sema F; DE Flags: Precursor; GN Name=SEMA5A; Synonyms=SEMAF; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RX PubMed=9464278; DOI=10.1006/bbrc.1997.8027; RA Simmons A.D., Puschel A.W., McPherson J.D., Overhauser J., Lovett M.; RT "Molecular cloning and mapping of human semaphorin F from the Cri-du-chat RT candidate interval."; RL Biochem. Biophys. Res. Commun. 242:685-691(1998). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=15372022; DOI=10.1038/nature02919; RA Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., RA Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., RA She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S., RA Branscomb E., Caoile C., Challacombe J.F., Chan Y.M., Denys M., RA Detter J.C., Escobar J., Flowers D., Fotopulos D., Glavina T., Gomez M., RA Gonzales E., Goodstein D., Grigoriev I., Groza M., Hammon N., Hawkins T., RA Haydu L., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., RA Lopez F., Lou Y., Martinez D., Medina C., Morgan J., Nandkeshwar R., RA Noonan J.P., Pitluck S., Pollard M., Predki P., Priest J., Ramirez L., RA Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., Thayer N., RA Tice H., Tsai M., Ustaszewska A., Vo N., Wheeler J., Wu K., Yang J., RA Dickson M., Cheng J.-F., Eichler E.E., Olsen A., Pennacchio L.A., RA Rokhsar D.S., Richardson P., Lucas S.M., Myers R.M., Rubin E.M.; RT "The DNA sequence and comparative analysis of human chromosome 5."; RL Nature 431:268-274(2004). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP FUNCTION, AND INTERACTION WITH PLXNB3. RX PubMed=15218527; DOI=10.1038/sj.embor.7400189; RA Artigiani S., Conrotto P., Fazzari P., Gilestro G.F., Barberis D., RA Giordano S., Comoglio P.M., Tamagnone L.; RT "Plexin-B3 is a functional receptor for semaphorin 5A."; RL EMBO Rep. 5:710-714(2004). RN [6] RP FUNCTION. RX PubMed=20696765; DOI=10.1074/jbc.m110.120451; RA Li X., Lee A.Y.; RT "Semaphorin 5A and plexin-B3 inhibit human glioma cell motility through RT RhoGDIalpha-mediated inactivation of Rac1 GTPase."; RL J. Biol. Chem. 285:32436-32445(2010). RN [7] RP FUNCTION. RX PubMed=19850054; DOI=10.1016/j.mvr.2009.10.005; RA Sadanandam A., Rosenbaugh E.G., Singh S., Varney M., Singh R.K.; RT "Semaphorin 5A promotes angiogenesis by increasing endothelial cell RT proliferation, migration, and decreasing apoptosis."; RL Microvasc. Res. 79:1-9(2010). RN [8] RP FUNCTION. RX PubMed=21706053; DOI=10.1038/onc.2011.256; RA Li X., Law J.W., Lee A.Y.; RT "Semaphorin 5A and plexin-B3 regulate human glioma cell motility and RT morphology through Rac1 and the actin cytoskeleton."; RL Oncogene 31:595-610(2012). RN [9] RP VARIANT 196-ARG--TYR-1074 DEL. RX PubMed=26637798; DOI=10.1016/j.neuron.2015.11.009; RA D'Gama A.M., Pochareddy S., Li M., Jamuar S.S., Reiff R.E., Lam A.T., RA Sestan N., Walsh C.A.; RT "Targeted DNA Sequencing from Autism Spectrum Disorder Brains Implicates RT Multiple Genetic Mechanisms."; RL Neuron 88:910-917(2015). CC -!- FUNCTION: Bifunctional axonal guidance cue regulated by sulfated CC proteoglycans; attractive effects result from interactions with heparan CC sulfate proteoglycans (HSPGs), while the inhibitory effects depend on CC interactions with chondroitin sulfate proteoglycans (CSPGs) (By CC similarity). Ligand for receptor PLXNB3. In glioma cells, SEMA5A CC stimulation of PLXNB3 results in the disassembly of F-actin stress CC fibers, disruption of focal adhesions and cellular collapse as well as CC inhibition of cell migration and invasion through ARHGDIA-mediated CC inactivation of RAC1. May promote angiogenesis by increasing CC endothelial cell proliferation and migration and inhibiting apoptosis. CC {ECO:0000250, ECO:0000269|PubMed:15218527, ECO:0000269|PubMed:19850054, CC ECO:0000269|PubMed:20696765, ECO:0000269|PubMed:21706053}. CC -!- SUBUNIT: Binds PLXNB3. CC -!- SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein. CC -!- SIMILARITY: Belongs to the semaphorin family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; U52840; AAC09473.1; -; mRNA. DR EMBL; AC004615; AAC14668.1; -; Genomic_DNA. DR EMBL; AC022446; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC027336; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC091906; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471102; EAX08078.1; -; Genomic_DNA. DR EMBL; CH471102; EAX08079.1; -; Genomic_DNA. DR EMBL; BC115696; AAI15697.1; -; mRNA. DR CCDS; CCDS3875.1; -. DR PIR; JC5928; JC5928. DR RefSeq; NP_003957.2; NM_003966.2. DR RefSeq; XP_006714569.1; XM_006714506.2. DR RefSeq; XP_006714570.1; XM_006714507.3. DR RefSeq; XP_011512457.1; XM_011514155.2. DR RefSeq; XP_011512458.1; XM_011514156.1. DR RefSeq; XP_011512459.1; XM_011514157.1. DR RefSeq; XP_011512460.1; XM_011514158.1. DR AlphaFoldDB; Q13591; -. DR SMR; Q13591; -. DR IntAct; Q13591; 2. DR STRING; 9606.ENSP00000371936; -. DR GlyCosmos; Q13591; 11 sites, No reported glycans. DR GlyGen; Q13591; 11 sites. DR iPTMnet; Q13591; -. DR PhosphoSitePlus; Q13591; -. DR SwissPalm; Q13591; -. DR BioMuta; SEMA5A; -. DR DMDM; 109939725; -. DR jPOST; Q13591; -. DR MassIVE; Q13591; -. DR PaxDb; 9606-ENSP00000371936; -. DR PeptideAtlas; Q13591; -. DR ProteomicsDB; 59586; -. DR Antibodypedia; 960; 326 antibodies from 29 providers. DR DNASU; 9037; -. DR Ensembl; ENST00000382496.10; ENSP00000371936.5; ENSG00000112902.12. DR Ensembl; ENST00000652226.1; ENSP00000499013.1; ENSG00000112902.12. DR GeneID; 9037; -. DR KEGG; hsa:9037; -. DR MANE-Select; ENST00000382496.10; ENSP00000371936.5; NM_003966.3; NP_003957.2. DR AGR; HGNC:10736; -. DR CTD; 9037; -. DR DisGeNET; 9037; -. DR GeneCards; SEMA5A; -. DR HGNC; HGNC:10736; SEMA5A. DR HPA; ENSG00000112902; Low tissue specificity. DR MalaCards; SEMA5A; -. DR MIM; 609297; gene. DR neXtProt; NX_Q13591; -. DR OpenTargets; ENSG00000112902; -. DR Orphanet; 281; Monosomy 5p. DR PharmGKB; PA35658; -. DR VEuPathDB; HostDB:ENSG00000112902; -. DR eggNOG; KOG3611; Eukaryota. DR GeneTree; ENSGT00940000158036; -. DR HOGENOM; CLU_005410_1_0_1; -. DR InParanoid; Q13591; -. DR OMA; VEIANCS; -. DR OrthoDB; 5399685at2759; -. DR PhylomeDB; Q13591; -. DR TreeFam; TF329951; -. DR PathwayCommons; Q13591; -. DR Reactome; R-HSA-416700; Other semaphorin interactions. DR Reactome; R-HSA-5083635; Defective B3GALTL causes PpS. DR Reactome; R-HSA-5173214; O-glycosylation of TSR domain-containing proteins. DR SignaLink; Q13591; -. DR SIGNOR; Q13591; -. DR BioGRID-ORCS; 9037; 10 hits in 1140 CRISPR screens. DR ChiTaRS; SEMA5A; human. DR GeneWiki; SEMA5A; -. DR GenomeRNAi; 9037; -. DR Pharos; Q13591; Tbio. DR PRO; PR:Q13591; -. DR Proteomes; UP000005640; Chromosome 5. DR RNAct; Q13591; Protein. DR Bgee; ENSG00000112902; Expressed in metanephric glomerulus and 189 other cell types or tissues. DR ExpressionAtlas; Q13591; baseline and differential. DR GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB. DR GO; GO:0016020; C:membrane; ISS:UniProtKB. DR GO; GO:0005886; C:plasma membrane; TAS:Reactome. DR GO; GO:0045499; F:chemorepellent activity; IBA:GO_Central. DR GO; GO:0035373; F:chondroitin sulfate proteoglycan binding; ISS:UniProtKB. DR GO; GO:0043395; F:heparan sulfate proteoglycan binding; ISS:UniProtKB. DR GO; GO:0030215; F:semaphorin receptor binding; ISS:UniProtKB. DR GO; GO:0045545; F:syndecan binding; ISS:UniProtKB. DR GO; GO:0048675; P:axon extension; IBA:GO_Central. DR GO; GO:0007411; P:axon guidance; IBA:GO_Central. DR GO; GO:0007413; P:axonal fasciculation; ISS:UniProtKB. DR GO; GO:0002043; P:blood vessel endothelial cell proliferation involved in sprouting angiogenesis; ISS:UniProtKB. DR GO; GO:0007155; P:cell adhesion; TAS:ProtInc. DR GO; GO:0060326; P:cell chemotaxis; ISS:UniProtKB. DR GO; GO:0007267; P:cell-cell signaling; TAS:ProtInc. DR GO; GO:0021536; P:diencephalon development; ISS:UniProtKB. DR GO; GO:0048843; P:negative regulation of axon extension involved in axon guidance; ISS:UniProtKB. DR GO; GO:0007162; P:negative regulation of cell adhesion; ISS:UniProtKB. DR GO; GO:2000352; P:negative regulation of endothelial cell apoptotic process; ISS:UniProtKB. DR GO; GO:0007399; P:nervous system development; TAS:ProtInc. DR GO; GO:0001755; P:neural crest cell migration; IBA:GO_Central. DR GO; GO:0050918; P:positive chemotaxis; ISS:UniProtKB. DR GO; GO:0030836; P:positive regulation of actin filament depolymerization; ISS:UniProtKB. DR GO; GO:0045766; P:positive regulation of angiogenesis; ISS:UniProtKB. DR GO; GO:0048842; P:positive regulation of axon extension involved in axon guidance; ISS:UniProtKB. DR GO; GO:0090263; P:positive regulation of canonical Wnt signaling pathway; ISS:UniProtKB. DR GO; GO:0030335; P:positive regulation of cell migration; IBA:GO_Central. DR GO; GO:2001028; P:positive regulation of endothelial cell chemotaxis; ISS:UniProtKB. DR GO; GO:0001938; P:positive regulation of endothelial cell proliferation; ISS:UniProtKB. DR GO; GO:0051897; P:positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; ISS:UniProtKB. DR GO; GO:0071526; P:semaphorin-plexin signaling pathway; IBA:GO_Central. DR GO; GO:1990256; P:signal clustering; ISS:UniProtKB. DR CDD; cd11263; Sema_5A; 1. DR Gene3D; 3.30.1680.10; ligand-binding face of the semaphorins, domain 2; 1. DR Gene3D; 2.20.100.10; Thrombospondin type-1 (TSP1) repeat; 6. DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1. DR InterPro; IPR002165; Plexin_repeat. DR InterPro; IPR016201; PSI. DR InterPro; IPR042821; Sema5A_sema. DR InterPro; IPR001627; Semap_dom. DR InterPro; IPR036352; Semap_dom_sf. DR InterPro; IPR027231; Semaphorin. DR InterPro; IPR000884; TSP1_rpt. DR InterPro; IPR036383; TSP1_rpt_sf. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf. DR PANTHER; PTHR11036; SEMAPHORIN; 1. DR PANTHER; PTHR11036:SF78; SEMAPHORIN-5A; 1. DR Pfam; PF01437; PSI; 1. DR Pfam; PF01403; Sema; 1. DR Pfam; PF00090; TSP_1; 5. DR PRINTS; PR01705; TSP1REPEAT. DR SMART; SM00423; PSI; 1. DR SMART; SM00630; Sema; 1. DR SMART; SM00209; TSP1; 6. DR SUPFAM; SSF103575; Plexin repeat; 1. DR SUPFAM; SSF101912; Sema domain; 1. DR SUPFAM; SSF82895; TSP-1 type 1 repeat; 6. DR PROSITE; PS51004; SEMA; 1. DR PROSITE; PS50092; TSP1; 6. DR Genevisible; Q13591; HS. PE 1: Evidence at protein level; KW Developmental protein; Differentiation; Disulfide bond; Glycoprotein; KW Membrane; Neurogenesis; Reference proteome; Repeat; Signal; Transmembrane; KW Transmembrane helix. FT SIGNAL 1..22 FT /evidence="ECO:0000255" FT CHAIN 23..1074 FT /note="Semaphorin-5A" FT /id="PRO_0000032335" FT TOPO_DOM 23..968 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 969..989 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 990..1074 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT DOMAIN 35..484 FT /note="Sema" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00352" FT DOMAIN 540..593 FT /note="TSP type-1 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT DOMAIN 595..651 FT /note="TSP type-1 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT DOMAIN 653..702 FT /note="TSP type-1 3" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT DOMAIN 707..765 FT /note="TSP type-1 4" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT DOMAIN 784..839 FT /note="TSP type-1 5" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT DOMAIN 841..896 FT /note="TSP type-1 6" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT DOMAIN 897..944 FT /note="TSP type-1 7" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00210" FT CARBOHYD 142 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 168 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 227 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 277 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 323 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 367 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 437 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 536 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 591 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 717 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 933 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT DISULFID 104..114 FT /evidence="ECO:0000250" FT DISULFID 131..140 FT /evidence="ECO:0000250" FT DISULFID 254..357 FT /evidence="ECO:0000250" FT DISULFID 278..320 FT /evidence="ECO:0000250" FT DISULFID 487..504 FT /evidence="ECO:0000250" FT DISULFID 496..513 FT /evidence="ECO:0000250" FT DISULFID 607..644 FT /evidence="ECO:0000250" FT DISULFID 611..650 FT /evidence="ECO:0000250" FT DISULFID 622..634 FT /evidence="ECO:0000250" FT DISULFID 665..696 FT /evidence="ECO:0000250" FT DISULFID 669..701 FT /evidence="ECO:0000250" FT DISULFID 680..686 FT /evidence="ECO:0000250" FT DISULFID 796..833 FT /evidence="ECO:0000250" FT DISULFID 800..838 FT /evidence="ECO:0000250" FT DISULFID 811..823 FT /evidence="ECO:0000250" FT DISULFID 853..890 FT /evidence="ECO:0000250" FT DISULFID 857..895 FT /evidence="ECO:0000250" FT DISULFID 868..880 FT /evidence="ECO:0000250" FT VARIANT 196..1074 FT /note="Missing (found in a patient with autism spectrum FT disorder; likely pathogenic)" FT /evidence="ECO:0000269|PubMed:26637798" FT /id="VAR_078706" FT VARIANT 246 FT /note="V -> L (in dbSNP:rs1806079)" FT /id="VAR_030294" FT VARIANT 792 FT /note="S -> L (in dbSNP:rs2290734)" FT /id="VAR_030295" FT CONFLICT 56 FT /note="V -> A (in Ref. 1; AAC09473)" FT /evidence="ECO:0000305" FT CONFLICT 149 FT /note="T -> A (in Ref. 1; AAC09473)" FT /evidence="ECO:0000305" FT CONFLICT 382 FT /note="M -> V (in Ref. 1; AAC09473)" FT /evidence="ECO:0000305" FT CONFLICT 494 FT /note="S -> R (in Ref. 2; AAC14668)" FT /evidence="ECO:0000305" FT CONFLICT 723 FT /note="G -> D (in Ref. 1; AAC09473)" FT /evidence="ECO:0000305" FT CONFLICT 835 FT /note="I -> T (in Ref. 1; AAC09473)" FT /evidence="ECO:0000305" SQ SEQUENCE 1074 AA; 120615 MW; AE073413AC974CCC CRC64; MKGTCVIAWL FSSLGLWRLA HPEAQGTTQC QRTEHPVISY KEIGPWLREF RAKNAVDFSQ LTFDPGQKEL VVGARNYLFR LQLEDLSLIQ AVEWECDEAT KKACYSKGKS KEECQNYIRV LLVGGDRLFT CGTNAFTPVC TNRSLSNLTE IHDQISGMAR CPYSPQHNST ALLTAGGELY AATAMDFPGR DPAIYRSLGI LPPLRTAQYN SKWLNEPNFV SSYDIGNFTY FFFRENAVEH DCGKTVFSRA ARVCKNDIGG RFLLEDTWTT FMKARLNCSR PGEVPFYYNE LQSTFFLPEL DLIYGIFTTN VNSIAASAVC VFNLSAIAQA FSGPFKYQEN SRSAWLPYPN PNPHFQCGTV DQGLYVNLTE RNLQDAQKFI LMHEVVQPVT TVPSFMEDNS RFSHVAVDVV QGREALVHII YLATDYGTIK KVRVPLNQTS SSCLLEEIEL FPERRREPIR SLQILHSQSV LFVGLREHVV KIPLKRCQFY RTRSTCIGAQ DPYCGWDVVM KKCTSLEESL SMTQWEQSIS ACPTRNLTVD GHFGVWSPWT PCTHTDGSAV GSCLCRTRSC DSPAPQCGGW QCEGPGMEIA NCSRNGGWTP WTSWSPCSTT CGIGFQVRQR SCSNPTPRHG GRVCVGQNRE ERYCNEHLLC PPHMFWTGWG PWERCTAQCG GGIQARRRIC ENGPDCAGCN VEYQSCNTNP CPELKKTTPW TPWTPVNISD NGGHYEQRFR YTCKARLADP NLLEVGRQRI EMRYCSSDGT SGCSTDGLSG DFLRAGRYSA HTVNGAWSAW TSWSQCSRDC SRGIRNRKRV CNNPEPKYGG MPCLGPSLEY QECNILPCPV DGVWSCWSPW TKCSATCGGG HYMRTRSCSN PAPAYGGDIC LGLHTEEALC NTQPCPESWS EWSDWSECEA SGVQVRARQC ILLFPMGSQC SGNTTESRPC VFDSNFIPEV SVARSSSVEE KRCGEFNMFH MIAVGLSSSI LGCLLTLLVY TYCQRYQQQS HDATVIHPVS PAPLNTSITN HINKLDKYDS VEAIKAFNKN NLILEERNKY FNPHLTGKTY SNAYFTDLNN YDEY //